en1b (en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596)


Basic Information

Item Value
gene id en1b
gene name en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1512321 ~ 1518371 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300031.1
GGCACGGGCCGCGGAGCATCACCGACCgccatgtgtgtgagtgtgttttgatCCTCGAGACGCGCTGAGAAAAAACAAAtctctataaataaatgaataaataagtgaaaagGTGCGCGAGGCATTCCGATGGTGCAGCGGCTTCAAGGTGCATCTAGAGATTGAAGATAATCTGCAGTTTTTTACTCCAGGATAAATATTTTGGTGGCAACAAGtgggatttttttgttgttattgctgttgttgttgttgttgttgttgttgaaacaaaaataaataaatggaggaGCGGAAGGATCCGTCCGAGCGCGAGAGCGCGTCCCCTCCGGTTCTAGCGCGCGAGGCGGCGCCGCAGGTCCACCGCACCACGAACTTCTTCATCGACAACATCCTGCGGCCCGACTTCGGCTGCAAGCGCGAGCTCCTCTCGAGCAGGGAAAACGTCAGCCCGCTGGTCGCGAGGCCGTCATCGCGCGCGGACTCCACCGCCGACCACCGCACTTcatcgtcttcttcttcttcttcatcttcatcttcttcttcctcttcttcttcctcgtcTCCGTCGTCTTCGTCGTCTTCCTCGTCGTCGTCCAAGGTGCTGGTGGAGGGAAGCACGAGGTGCGGAGACGGCTCGAATCTCACGGCGGTGAACGGCGCGAGCGGCGGcggaggtggtggaggaggtggaggaggtggaggcgcagcagcagcagcaggaacaacaacaacaacaaccacaagcACGGCGGCGGCCAAAGACAGCACACAACCTCTGCTGTGGCCCGCGTGGGTCTACTGCACGCGCTACTCGGACAGACCCTCATCCGTTCTCGGACCAGGACCGAGGACCCGgaagctgaagaagaagaagagcgaCAAGGAGGACAAGCGGCCGCGCACCGCCTTCACGGCCGAGCAGCTGCAGCGGCTCAAGGCGGAGTTCCAGGCGAGTCGCTACATCACGGAGCAGCGGCGGCAGTCGCTCGCGCAGGAGCTCAACCTCAACGAGTCGCAGATCAAAATCTGGTTCCAGAACAAAAGAGCCAAGATCAAGAAGGCGAGCGGCTACAAGAACGGACTGGCGCTGCAGCTGATGGCGCAGGGACTCTACAACCACTCCACCACCACCGTCCAGGAGGACAAGGAGGACAGCGAGTAGCAGCGTGCACGAGCAGCCTGAGGCTGGGGATTAATCCTCtttcaataacagcaacaataaacCTGTtcataattttcttcttctccatgaattttatttaaaaatagcgATCGGCGCAATTactaggggtccaagcaccaaataTACTGGAAAcctcctattattattattattattattattattattattatttggagaAGAAGATTATTATCACtgatctcctcctcctcctcctcctcctcatagcctcatctcctcatctcctCATTTCATCCATCTTTTCACTGATATCTAAAAAAAGAGACGctgaggactttttttttttttttttttttttaggagattCATATAAAACGCGGAGTTTCATGGACGCTGACCCAAAGCGACCTTCTGACATGAAGAAGAGGACAAGAATTCCTTATTTAATTCTGTACAAATATATGGACTCTACGAAgatttctataaatataaatataaatatatatatatataatagccAAAATTGTaagatgtatatatttaaaattcagGTAAGGCTGAGACGTGTGTGTTTCTCCTTACTTGCTGgcaatttgttcttttttttttttttttttttttttttt
>XM_034300032.1
GGCACGGGCCGCGGAGCATCACCGACCgccatgtgtgtgagtgtgttttgatCCTCGAGACGCGCTGAGAAAAAACAAAtctctataaataaatgaataaataagtgaaaagGTGCGCGAGGCATTCCGATGGTGCAGCGGCTTCAAGGTGCATCTAGAGATTGAAGATAATCTGCAGTTTTTTACTCCAGGATAAATATTTTGGTGGCAACAAGtgggatttttttgttgttattgctgttgttgttgttgttgttgttgttgaaacaaaaataaataaatggaggaGCGGAAGGATCCGTCCGAGCGCGAGAGCGCGTCCCCTCCGGTTCTAGCGCGCGAGGCGGCGCCGCAGGTCCACCGCACCACGAACTTCTTCATCGACAACATCCTGCGGCCCGACTTCGGCTGCAAGCGCGAGCTCCTCTCGAGCAGGGAAAACGTCAGCCCGCTGGTCGCGAGGCCGTCATCGCGCGCGGACTCCACCGCCGACCACCGCACTTcatcgtcttcttcttcttcttcatcttcatcttcttcttcctcttcttcttcctcgtcTCCGTCGTCTTCGTCGTCTTCCTCGTCGTCGTCCAAGGTGCTGGTGGAGGGAAGCACGAGGTGCGGAGACGGCTCGAATCTCACGGCGGTGAACGGCGCGAGCGGCGGcggaggtggtggaggaggtggaggaggtggaggcgcagcagcagcagcaggaacaacaacaacaacaaccacaagcACGGCGGCGGCCAAAGACAGCACACAACCTCTGCTGTGGCCCGCGTGGGTCTACTGCACGCGCTACTCGGACAGACCCTCATCCGGACCGAGGACCCGgaagctgaagaagaagaagagcgaCAAGGAGGACAAGCGGCCGCGCACCGCCTTCACGGCCGAGCAGCTGCAGCGGCTCAAGGCGGAGTTCCAGGCGAGTCGCTACATCACGGAGCAGCGGCGGCAGTCGCTCGCGCAGGAGCTCAACCTCAACGAGTCGCAGATCAAAATCTGGTTCCAGAACAAAAGAGCCAAGATCAAGAAGGCGAGCGGCTACAAGAACGGACTGGCGCTGCAGCTGATGGCGCAGGGACTCTACAACCACTCCACCACCACCGTCCAGGAGGACAAGGAGGACAGCGAGTAGCAGCGTGCACGAGCAGCCTGAGGCTGGGGATTAATCCTCtttcaataacagcaacaataaacCTGTtcataattttcttcttctccatgaattttatttaaaaatagcgATCGGCGCAATTactaggggtccaagcaccaaataTACTGGAAAcctcctattattattattattattattattattattattatttggagaAGAAGATTATTATCACtgatctcctcctcctcctcctcctcctcatagcctcatctcctcatctcctCATTTCATCCATCTTTTCACTGATATCTAAAAAAAGAGACGctgaggactttttttttttttttttttttttaggagattCATATAAAACGCGGAGTTTCATGGACGCTGACCCAAAGCGACCTTCTGACATGAAGAAGAGGACAAGAATTCCTTATTTAATTCTGTACAAATATATGGACTCTACGAAgatttctataaatataaatataaatatatatatatataatagccAAAATTGTaagatgtatatatttaaaattcagGTAAGGCTGAGACGTGTGTGTTTCTCCTTACTTGCTGgcaatttgttcttttttttttttttttttttttttttt

Function

symbol description
en1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus. Implicated in Parkinson's disease.

NR:

description
PREDICTED: homeobox protein engrailed-1-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048663 neuron fate commitment biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09319 EN; homeobox protein engrailed

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300031.1 True 1770 mRNA 0.49 2 1512321 1518371
XM_034300032.1 False 1758 mRNA 0.49 2 1512321 1518371

Neighbor

gene id symbol gene type direction distance location
LOC113535431 LOC108258373 coding downstream 146415 1355723 ~ 1365906 (-)
slc5a10 slc5a10 coding downstream 266280 1204764 ~ 1246041 (-)
LOC113535776 LOC108258401 coding downstream 321773 1167628 ~ 1190548 (-)
cacna1hb LOC108258317 coding downstream 398722 1052390 ~ 1113599 (-)
myo15ab LOC108258396,LOC107725350,LOC107692700,LOC108441473,LOC108439093 coding downstream 486300 987755 ~ 1026021 (-)
pard3ba pard3b coding upstream 100449 1618820 ~ 1738935 (-)
LOC113535707 LOC108258365,LOC108437114 coding upstream 376677 1895048 ~ 1909374 (-)
klf7a LOC108258322 coding upstream 397292 1915663 ~ 1937075 (-)
LOC117596168 NA coding upstream 738050 2256421 ~ 2259148 (-)
LOC113535651 NA coding upstream 742918 2261289 ~ 2271653 (-)
G369305 NA non-coding downstream 115416 1396604 ~ 1396905 (-)
G369297 NA non-coding downstream 115723 1370134 ~ 1396598 (-)
G369302 NA non-coding downstream 126659 1384921 ~ 1385662 (-)
G369298 NA non-coding downstream 137108 1365363 ~ 1375213 (-)
G369243 LOC108258881,LOC108261507 non-coding downstream 234671 1277073 ~ 1277650 (-)
G369523 NA non-coding upstream 19706 1538077 ~ 1588650 (-)
G369573 NA non-coding upstream 267182 1785553 ~ 1823504 (-)
G369596 NA non-coding upstream 284738 1803109 ~ 1805302 (-)
G369617 NA non-coding upstream 334978 1853349 ~ 1853782 (-)
G369618 NA non-coding upstream 336069 1854440 ~ 1854653 (-)
G369242 LOC108258881 other downstream 235508 1276021 ~ 1276813 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 563518 869759 ~ 948803 (-)
G369125 actb other downstream 596638 911553 ~ 915683 (-)
prkcba prkcb other downstream 809976 653453 ~ 702345 (-)
rasd3 LOC108258668 other downstream 919726 591136 ~ 592595 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other upstream 20082 1538453 ~ 1611666 (-)
G369586 NA other upstream 257948 1776319 ~ 1795224 (-)
mdh1b mdh1b other upstream 305833 1824204 ~ 1832729 (-)
LOC113535702 mx1 other upstream 1048386 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 1324841 2843212 ~ 2853211 (-)

Expression


Co-expression Network