LOC113537693


Basic Information

Item Value
gene id LOC113537693
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16012272 ~ 16024511 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300053.1
GGGAAGGAAATAGCACCAGATTTGAACCAAATCCAGCAGTTTGACTGTTTAAACCCTCAGAGCCACttctgttatttctgttttttatatcTGGATGCAGGAGATGAACTTCATTTAATGAGTAAATATACAGGCAGctctgatgatgatgtcactcaGATTGACTCCTCCCCTTTTTCTACTGTTTCTGCTCATGATTTCAGGAGTTGCTGCAGGAGTTGCTGTTTCTCAGGACTGGGATGTGTATTACACACCAAAGTCTATCTGTGCTCTAAAGGGATCTACAGTGACCATGGGCTGCAGATACACATATCCAGCTGGTTACACATTTGAGAGAGGTATCTGGAGCAGAGAGTTGGTTACAGATAAAGAGCCTCCTGATTTGACTTCAGACCCAAAGTACAGAGGCAGGGTTCAGTACCTCGGAGACAAACCGCGTGACTGCAGTCTCAGACTGAGTGATGTGAGAGAACAGGACCAAGGCAAATACTACTTCAGATTTTTAACAACTTTTGCTGGAGGAAAGTATCAAGGTCAAGATGGAGTTGACCTTTCTGTCACAGCCATTTTGTACTTGCTGCTCTGTGAACTTGTCCTTTTTGTGGAGTTTTGTGGATGTCAGCTTACGGAGCTCGAGGTACAGATTCCTGATAGAGTGATTGAAGGAGATGCAGTCACTCTCACCTGTAAAACCAGGAACAGACTGAGTGGCAATACAACACTTATATGGTACAGAAGTGGACGTCGATTATCTTCTTCCACTAACCTGCTCCGTCTGCCATCAGTCAGACAGAGCGATGTAGGCAGATACAGCTGTGCTGTACAAGATAGTCAGTCCTGTGATGTCACTCTTGAAGTCCAGTATCCTCCAAAGAGAGTCTCAGTGTCCATCAGACCCTCTGGTAAGATAGTAGAGGGccgttcagtgactctgacctgcagcagtgatgctaaaCCACCTGCACAGAACTACACCTGGTATAAGGGAGCATCCTATATCAGAAGAGGAAAAACCTACACCATCTACACTATCAGCTCTGAGGACAGTGGAAATTACACGTGCCGGGCTGGAAATGAACACGGACAACAGTCCTCTACTGCTGTGTCTCTGAATGTCCTGTCTTCTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGCACACCTACACCTGGCATAAAGGAACATCCTATATAGGAACGGGAAACACCTACACCATCAACAAGATCAGCTCTGAGGACAGTGGAGAGTACAAGTGCAAGTCCAGTAATCAATATGGAGAGAAATACTCTGATGGAGCgactttaaatgttttgtATCCCCCTAAGAATGTCTCAGTGTCCATCAGTCACTCTAGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGTATAGCTGGTTTAAAGGAACATCATATAAAAGCAATGGAAAAACCTACACCTTTAGAAAAATCAGCTCTGAGGACAGTGGACCGTATAAGTGCAAGTCCAGCAATCAATATGGAGCGAAATATTCTGATGAAGTGACTATAAAGGTTTTGTatCCTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAGCTACAACTGGTATAAAGGAACATCCTCTATAGGAACAGGAAAAACCTACACCATCTACACTATCAGCACTGAGGACAGTGGAGAATACAAGTGCAATGTCAGAAATCGATACGGAGAGAAATACTCTGATGGAGTgactttaaatattttgtATCCTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGCAGACTTACACCTGGTTTAAGGGAACATCCTATATAGGAACAGGACAATCTTATATCATTAACAGAATCAGCTCTGAGGACAGTGGAGATTACAAGTGCAAGTCCAGTAATCAACACGGAGAGAAATACACTGATGGAGTgactttaaatgttttgtATCCCCCTAAGAATGTCTCAGTGTCCATCAGTCGCTCTGGTGAGATAGTGGAGGGTAGtgactcagtgactctgacctgcagcagtgatgctaacccACCTGTGCATGACTACACCTGGTATAAAGTGGATGAAAGCTCACCTGTAGGATCTGGACAGAGTTACAGCTTCACATTGAGGTTCAACAGCAGTGGATGGTTTTACTGTGTGGCTCAGAATAAATACGGGAATCAGACAGCAGCTGCAGTGGCTCTCACTCTAAATGGGGGTACAAGTGTAGTTCTGTATGTAGTTCTTGGAGTGACAGTTGGATGTGGATGTTTATTTGCCATCATTGGTGTTTTATGTATGAGgagaaagagaagaggatGTTCAACTCATCATACCAAGTCTAATGAGAACATTTACTGCAGTCCTACTGAAGACACGTACACAGCTCTTGATCTTCAGTGCAGGTCCTCCAAAGACGTGTATGACACACTTGCAacGGTTCACCCAAGTTCTCCTGATGACACGTACACAGCTATGGATTCATAGTCCATCTCTCCTGATTACGACACTTTAACAACTGCAAGAAAACAACGAGATCATCAACATCGACACCatgtcgagagagagagatgagagatgagagatgaccAGTGCTAGAATAGTTCTGTTTTTGAGCTGTCTGTGGATCAATATTGAACTCTATCTTAAAATAGTTGAAGAGTGAGAGCTTTACATTTATGAACACGTATATATTGAGTGTGCATTGATTTTGAACTGTTCAGCGTATGCATCCTTTTTCTACGTGTGctgtacttttttccccatttttaattatagttttatatttaccTGCTAAAGTAATACACTGTACTCATGCTTCACTTGTTCTTTAAGCACAAAAATGTGTGCCATTAAGGATTTACACAATAAACGTGAATATGATGTA
>XM_034300054.1
GGGAAGGAAATAGCACCAGATTTGAACCAAATCCAGCAGTTTGACTGTTTAAACCCTCAGAGCCACttctgttatttctgttttttatatcTGGATGCAGGAGATGAACTTCATTTAATGAGTAAATATACAGGCAGctctgatgatgatgtcactcaGATTGACTCCTCCCCTTTTTCTACTGTTTCTGCTCATGATTTCAGGAGTTGCTGCAGGAGTTGCTGTTTCTCAGGACTGGGATGTGTATTACACACCAAAGTCTATCTGTGCTCTAAAGGGATCTACAGTGACCATGGGCTGCAGATACACATATCCAGCTGGTTACACATTTGAGAGAGGTATCTGGAGCAGAGAGTTGGTTACAGATAAAGAGCCTCCTGATTTGACTTCAGACCCAAAGTACAGAGGCAGGGTTCAGTACCTCGGAGACAAACCGCGTGACTGCAGTCTCAGACTGAGTGATGTGAGAGAACAGGACCAAGGCAAATACTACTTCAGATTTTTAACAACTTTTGCTGGAGGAAAGTATCAAGGTCAAGATGGAGTTGACCTTTCTGTCACAGAGCTCGAGGTACAGATTCCTGATAGAGTGATTGAAGGAGATGCAGTCACTCTCACCTGTAAAACCAGGAACAGACTGAGTGGCAATACAACACTTATATGGTACAGAAGTGGACGTCGATTATCTTCTTCCACTAACCTGCTCCGTCTGCCATCAGTCAGACAGAGCGATGTAGGCAGATACAGCTGTGCTGTACAAGATAGTCAGTCCTGTGATGTCACTCTTGAAGTCCAGTATCCTCCAAAGAGAGTCTCAGTGTCCATCAGACCCTCTGGTAAGATAGTAGAGGGccgttcagtgactctgacctgcagcagtgatgctaaaCCACCTGCACAGAACTACACCTGGTATAAGGGAGCATCCTATATCAGAAGAGGAAAAACCTACACCATCTACACTATCAGCTCTGAGGACAGTGGAAATTACACGTGCCGGGCTGGAAATGAACACGGACAACAGTCCTCTACTGCTGTGTCTCTGAATGTCCTGTCTTCTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGCACACCTACACCTGGCATAAAGGAACATCCTATATAGGAACGGGAAACACCTACACCATCAACAAGATCAGCTCTGAGGACAGTGGAGAGTACAAGTGCAAGTCCAGTAATCAATATGGAGAGAAATACTCTGATGGAGCgactttaaatgttttgtATCCCCCTAAGAATGTCTCAGTGTCCATCAGTCACTCTAGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGTATAGCTGGTTTAAAGGAACATCATATAAAAGCAATGGAAAAACCTACACCTTTAGAAAAATCAGCTCTGAGGACAGTGGACCGTATAAGTGCAAGTCCAGCAATCAATATGGAGCGAAATATTCTGATGAAGTGACTATAAAGGTTTTGTatCCTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGAGCTACAACTGGTATAAAGGAACATCCTCTATAGGAACAGGAAAAACCTACACCATCTACACTATCAGCACTGAGGACAGTGGAGAATACAAGTGCAATGTCAGAAATCGATACGGAGAGAAATACTCTGATGGAGTgactttaaatattttgtATCCTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGCAGACTTACACCTGGTTTAAGGGAACATCCTATATAGGAACAGGACAATCTTATATCATTAACAGAATCAGCTCTGAGGACAGTGGAGATTACAAGTGCAAGTCCAGTAATCAACACGGAGAGAAATACACTGATGGAGTgactttaaatgttttgtATCCCCCTAAGAATGTCTCAGTGTCCATCAGTCGCTCTGGTGAGATAGTGGAGGGTAGtgactcagtgactctgacctgcagcagtgatgctaacccACCTGTGCATGACTACACCTGGTATAAAGTGGATGAAAGCTCACCTGTAGGATCTGGACAGAGTTACAGCTTCACATTGAGGTTCAACAGCAGTGGATGGTTTTACTGTGTGGCTCAGAATAAATACGGGAATCAGACAGCAGCTGCAGTGGCTCTCACTCTAAATGGGGGTACAAGTGTAGTTCTGTATGTAGTTCTTGGAGTGACAGTTGGATGTGGATGTTTATTTGCCATCATTGGTGTTTTATGTATGAGgagaaagagaagaggatGTTCAACTCATCATACCAAGTCTAATGAGAACATTTACTGCAGTCCTACTGAAGACACGTACACAGCTCTTGATCTTCAGTGCAGGTCCTCCAAAGACGTGTATGACACACTTGCAacGGTTCACCCAAGTTCTCCTGATGACACGTACACAGCTATGGATTCATAGTCCATCTCTCCTGATTACGACACTTTAACAACTGCAAGAAAACAACGAGATCATCAACATCGACACCatgtcgagagagagagatgagagatgagagatgaccAGTGCTAGAATAGTTCTGTTTTTGAGCTGTCTGTGGATCAATATTGAACTCTATCTTAAAATAGTTGAAGAGTGAGAGCTTTACATTTATGAACACGTATATATTGAGTGTGCATTGATTTTGAACTGTTCAGCGTATGCATCCTTTTTCTACGTGTGctgtacttttttccccatttttaattatagttttatatttaccTGCTAAAGTAATACACTGTACTCATGCTTCACTTGTTCTTTAAGCACAAAAATGTGTGCCATTAAGGATTTACACAATAAACGTGAATATGATGTA

Function

GO: NA

KEGG:

id description
K06467 CD22, SIGLEC2; CD22 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300053.1 True 3086 mRNA 0.44 16 16012272 16024511
XM_034300054.1 False 3020 mRNA 0.44 15 16012272 16024511

Neighbor

gene id symbol gene type direction distance location
LOC113537394 NA coding downstream 12278 15986787 ~ 15999994 (-)
slc25a23a slc25a23a,LOC108258471,LOC103026535,LOC107747161,LOC107594260 coding downstream 56992 15945851 ~ 15955280 (-)
avpi1 NA coding downstream 117277 15886599 ~ 15894995 (-)
cdc25d LOC108258441 coding downstream 142718 15859404 ~ 15869554 (-)
pgam1b pgam1b,pgam1a,LOC108258456,LOC107700858,LOC103038634,LOC107598490,LOC107703810,LOC108436383 coding downstream 153955 15853218 ~ 15858317 (-)
LOC113537692 NA coding upstream 7488 16031999 ~ 16037975 (-)
LOC117596132 NA coding upstream 21217 16045728 ~ 16051187 (-)
peli1a LOC108258444 coding upstream 32433 16056944 ~ 16069586 (-)
sertad2a NA coding upstream 81584 16106095 ~ 16111872 (-)
rab1aa rab1a,LOC107676578,LOC105021598,LOC107666439,LOC103035225,LOC108436370 coding upstream 93877 16118388 ~ 16126954 (-)
G376982 NA non-coding downstream 64193 15947648 ~ 15948079 (-)
G376961 NA non-coding downstream 128849 15881973 ~ 15883423 (-)
G376934 NA non-coding downstream 189767 15812366 ~ 15822505 (-)
G376840 NA non-coding downstream 232570 15778247 ~ 15779702 (-)
G376807 NA non-coding downstream 295326 15716192 ~ 15716946 (-)
G377087 NA non-coding upstream 141187 16165698 ~ 16169196 (-)
G377084 NA non-coding upstream 154099 16178610 ~ 16179122 (-)
G377125 NA non-coding upstream 239392 16263903 ~ 16265647 (-)
G377171 NA non-coding upstream 324866 16349377 ~ 16350060 (-)
G377172 NA non-coding upstream 325738 16350249 ~ 16350459 (-)
vps54 vps54,LOC107709616 other downstream 27313 15963876 ~ 15984959 (-)
khsrp khsrp other downstream 69542 15929753 ~ 15942730 (-)
G376956 NA other downstream 91719 15917628 ~ 15920553 (-)
dpy30 dpy30,LOC107684266 other downstream 554067 15412424 ~ 15458205 (-)
triobpa LOC108259073 other downstream 883016 15117512 ~ 15129256 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 128408 16152919 ~ 16164370 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other upstream 192239 16216750 ~ 16221615 (-)
LOC113537389 NA other upstream 396750 16421261 ~ 16475431 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other upstream 541742 16566253 ~ 16583137 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other upstream 596656 16621167 ~ 16741989 (-)

Expression


Co-expression Network