LOC117596132


Basic Information

Item Value
gene id LOC117596132
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16045728 ~ 16051187 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300063.1
GTGGAAAGGAAATAGCAACACATTTGAACTACATCCAGCAGTTTGACCGTATAAACCCTCAGAGCCACTCctgttatttctcttttttgtgtCCGGATGCAGGAGATGAACTTCGTTAATGAGTAAATATACAGGCAGCACAAATGATGATGTCACTCAGAttgactcctccccttttccTGCTGTTTCTGCTCATGATTTCAGGAGTTGTTGTTTCTGAGGACTGGGATGTGTATTACACACCAAAGTCTATCTGTGCTCTAAAGGGATCTACAGTGACCATGGGCTGCAGATACACATATCCGGCTGGTTACACAGTTGAGAGAGGTATCTGGAGCAGAGAGTTAGTTACAGATAAAGAGCCTCCTGATCTGACTTCAGACCCAAAGTACAGCGGCAGGGTTCAGTACCTCGGAGACACATTGCGTGACTGCAGTCTCAGACTGAGTGATGTGAGAGAAGAGGACCAAGGCAAATACTACTTCAGATTTATAACAACATTCGCTGGAGGAAAGTTTCAGGGTAAAGATGGAGTTGATCTTTCTGTCACAGAGCTTGAGGTAGAGATTCCTGATAGAGTGTTTGAAGGAGATGCAGTCACTCTCACCTGTAAAACCAGGAACAGACTGAGTCGCAATCCAACATTTAGCTGGTACAAAAGTGGACGTCGTTTATCCTCCTCCACTAACCTGCTCCGTCTGCCATCAGTCAGTCAGAGCGATGTAGGCAGATACAGCTGTGCTGTACAAGATAGTCAGTCCTGTGATGTCACTCTTGATGTCCAGTATCCTCCAAAGAGAGTCTCAGTGTCCGTCAGTCCCCCTGGTGACATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaaaCCACCTGCACAGAACTACACCTGGTATAAAGGAACATCCTCTATAGGAACGGGAAAAACTTACACCATCAACAAGACCAGCTCTAAGGACAGTGGAGGTTACACATGCCAGGCTGAAAATATACATGGACTTCAGTCCTCAACTGCTGCGTCTCTGAATGTCCTGTattcTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGTATAGCTGGTTTAAAGGAACATCACCTAAAAGCAATGGAAAAACCTACACCATTAGAAAGATCAGCTCTAAGGACCGTGGAGAGTATAAGTGCAAGTCCAGGAACCAATATGGAGAGAAATATTCTGCTGAAGTGACTATAAAAGTTTTGTatCCTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGgagggcagttcagtgactctgagctgcagcagtgatgctaacccACCTGTGGAGAGCTACAACTGGTATAAGGGAACATCCTATATAGGAACAGGACAATCTTACATCATTAACACGATCAGCTCTAAGGACAGTGGAGATTACAAGTGCAAGTGCAGTAATCAACACGGAGAGAAATACTCTGATGGAGCgactttaaatgttttgtATGCTCCAAAGAGAGTCTCAGTGTCCATCAGTCGCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGCAGAACTACACCTGGTATAAGGTGGATGAAAGCTCACCTGTAGGATCTGGacagagttacagctttacactgAGGTTCAACAGCAGTGGATGGTTTTACTGCGTGGCTCAGAATAAATATGGGAATCAGACAGCAGCTGCAGTGGCTCTCACTCTAAATGGGGGTACAAGTGTAGTTCTGTATGTAGTTCTTGGAGTCACTGTTGGATGTGGATGTTTATTTGCCATCATTGGTGTTTTATGTATGAGgagaaagagaagaggatGTTCAACTGATCATACCAAGTCTAATGAGAACATTTACTGCAGTCCTACTGAAGACACGTACACAGCTCTTGATCTTCAGACCAGGTCCTCCAAAGACATGTATGACACACTTGCAacggTTCACCCAAGTTCTCCTGATGACACGTACACAGCTCTGGATTCCAAGTCCATCTCTCCTGATTACGACACTTTAACAACTGCAAGAAAACAACAGTGAGATCATCAACATCGACACCatgtcaagagagagagagagagagagagagatgaccaATGCTagtatatttctgtttttgagcTGTGGATCAATATTGAACTCTATCTTTAAATAGTTGAAGAGTGAGAGCTTTACATTTAtgaacacatatatatattgaaattaACAGCAGTGTGCAGGCATTTTGAACCGTTCTGCTTTGCACCTATGCATCCTTTTTCTAtgtgtgctgtattttttttccctctttttaattagatgtttatatttttatatttacctgCTAAAGTAACACACTGTACTCATGCTTCACTTATTCTTTAAGCACAAAAATGTGTGCCATTAAGGATTTACACAATAAACTCAAATATGATGTATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300063.1 True 2521 mRNA 0.44 13 16045728 16051187

Neighbor

gene id symbol gene type direction distance location
LOC113537692 NA coding downstream 7753 16031999 ~ 16037975 (-)
LOC113537693 NA coding downstream 21217 16012272 ~ 16024511 (-)
LOC113537394 NA coding downstream 45734 15986787 ~ 15999994 (-)
slc25a23a slc25a23a,LOC108258471,LOC103026535,LOC107747161,LOC107594260 coding downstream 90448 15945851 ~ 15955280 (-)
avpi1 NA coding downstream 150733 15886599 ~ 15894995 (-)
peli1a LOC108258444 coding upstream 5757 16056944 ~ 16069586 (-)
sertad2a NA coding upstream 54908 16106095 ~ 16111872 (-)
rab1aa rab1a,LOC107676578,LOC105021598,LOC107666439,LOC103035225,LOC108436370 coding upstream 67201 16118388 ~ 16126954 (-)
pane1 cenpm coding upstream 94942 16146129 ~ 16150858 (-)
mri1 mri1,LOC107594353,LOC107703717,LOC106595636,LOC107700835 coding upstream 119636 16170823 ~ 16178495 (-)
G376982 NA non-coding downstream 97649 15947648 ~ 15948079 (-)
G376961 NA non-coding downstream 162305 15881973 ~ 15883423 (-)
G376934 NA non-coding downstream 223223 15812366 ~ 15822505 (-)
G376840 NA non-coding downstream 266026 15778247 ~ 15779702 (-)
G376807 NA non-coding downstream 328782 15716192 ~ 15716946 (-)
G377087 NA non-coding upstream 114511 16165698 ~ 16169196 (-)
G377084 NA non-coding upstream 127423 16178610 ~ 16179122 (-)
G377125 NA non-coding upstream 212716 16263903 ~ 16265647 (-)
G377171 NA non-coding upstream 298190 16349377 ~ 16350060 (-)
G377172 NA non-coding upstream 299062 16350249 ~ 16350459 (-)
vps54 vps54,LOC107709616 other downstream 60769 15963876 ~ 15984959 (-)
khsrp khsrp other downstream 102998 15929753 ~ 15942730 (-)
G376956 NA other downstream 125175 15917628 ~ 15920553 (-)
dpy30 dpy30,LOC107684266 other downstream 587523 15412424 ~ 15458205 (-)
triobpa LOC108259073 other downstream 916472 15117512 ~ 15129256 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 101732 16152919 ~ 16164370 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other upstream 165563 16216750 ~ 16221615 (-)
LOC113537389 NA other upstream 370074 16421261 ~ 16475431 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other upstream 515066 16566253 ~ 16583137 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other upstream 569980 16621167 ~ 16741989 (-)

Expression


Co-expression Network