mri1 (mri1,LOC107594353,LOC107703717,LOC106595636,LOC107700835)


Basic Information

Item Value
gene id mri1
gene name mri1,LOC107594353,LOC107703717,LOC106595636,LOC107700835
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16170823 ~ 16178495 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300082.1
AAGGTTAGACTTGGATTTAGGTTTAATAAAGCATAATTTATCTTCATTActaatggaaggtcctcacaaagatagtAGGACAgacgtgttgtgtgtgtgtgtgtgtgtgtgtgttttgaactagtgtttgtttattttatctcCACGCCACATGTCCAAGGGTCAGCGTGTGAAGTCTCACGTGTGCGCGCCAGGCTGTCTATGCTGAGGTGACGGGAGCGCGCACGAAAACCGAAAACGGTGGGCGTGGCCAAAGAAAAAGAGCCGTGCGTTTCCTGCCGGAAGGAGCACGTGCTTCCGTGAGAGGTCCCTCTGTCAAGTCGGTGCGCcttgttgtatgtgtgtgtatgtatgtgtgtgtgtgtttgtgtgtgtatgtgtgtgtgtgtgtagccctTTAAATCGCGCCCACACTGCGAGGCTTTCACggtgtttgggtttttttgttttattttgttttggtttgtttttttcttctcactccCGGTATCCCTCGCGCATAGCGTTCAGCGGAACCCGCACGCGCTCGGATTGAGCAGGTCTGAAGCAGGGTCATGACGCTAGAAGCGATCCGGTACCGGGCCGGGTCTCTGCAGATCCTCAACCAGCTGCTGCTGCCGCGCGAGACGGTGTACGAGGAGATCCGCTCGGTGCAGGACGGATACGAGGCCATCAAGAGCATGAAGGTGCGCGGCGCTCCTGCCATCGCCATCGTGGGCTGCCTGAGCCTGGCAGTGGAGCTGCGGGCGGGCGCCGGGGGCGATGACCCCGTGTCCTTCATCAGGGAGTCTCTGTGTCACCTGACCTCAGCACGACCCACCGCTGTCAATATGGGGCGAGCAGCGCGAGAGCTGATGGAGTTCACCGAGAATGAGAGCATGGAGAAAGGCGGAGAGCAACTCAGAGAAAGCGTAATCGGTTGGATTGAGGAAATGCTGGAACGAGATGTGAATGATAACCGGAAGATTGGTAACTATGGCGCCCAGCACATCCTGTCCGGAGTGCCGAGAGACTCCGTCAccatcctcacacactgcaacacGGGCAGCCTGGCCACCGCTGGATATGGAACCGCTCtcggtgtggtGCGGTCGCTGCACGCTCTGGGTCGTCTGAAGCGAGTGTATTGTACAGAGACGAGGCCGTATAATCAGGGAGCCAGGCTTACAGCATACGAGGCCGTGGCCGAGGGCTTCCCTGCTACACTCATCACAGACAGCATGGCCGCTCTCGCCATGAGGGAGAAAGGcatcacagccgtCGTTGTCGGGGCAGATCGGGTCGTCGCTAATGGTGACACGGCCAACAAAGTTGGCACGTACCAGCTGGCCATTGCTGCAAAGCATCATGGGATACCGTTCTACGTGGCAGCTCCCAGCACATCATGTGACCTGAGTCTGGAGAGTGGGAGAGACATCGTGATCGAAGAGAGACCTCCGGAGGAGCTCACCAGCATCAACGGCGTCCCTGTCGctgctcCAGGTATCGATGTGTGGAACCCGGCGTTCGATGTCACTCCTCATCAGCTGATAACGGGTGGGATCATCACCGAGCTCGGTGTGTTTCTGCCGTCTGAGCTGCAGGCCGCTCTCACCGGCCGTCTCACCGCGCTGTAGAGGCCACGCCGCCCCCCGCAGGGCACAGTGTGTTACTGCACCTTCACTACCACCCTACAGCTCACACCCTCATTCCCATTACTTCCCACAGGGTGGAAATCTCAcctcctttaaacacacacacacacatgaagtatgaaatgaaaattacaCCACAATGATACATTTTCACAGTCGTACAACAACCGGAACGCTTATAAATCACACCCGCACATACACACGTACGCACAGACACATAGTCACCAACCACCTTGTTTCAAGTCTGTGTGTAATGTAGCTTTCAacagtgtgtgttctctgtttctgtgattATTCTTTAAATGCCCTTCCCTTTCCTCCTTCCTCGCTCAGCTCCAGTCCTTACTGAACGGTGGATTACCGAGCGCGGCTCTAGCGAGGGCATCTCGTTTTATAATAGACATTTCAGAAGTAATAACGATAAATTAATAATTCA

Function

symbol description
mri1 Predicted to enable S-methyl-5-thioribose-1-phosphate isomerase activity. Predicted to be involved in L-methionine salvage from methylthioadenosine. Predicted to act upstream of or within methionine biosynthetic process. Predicted to be located in cytoplasm and nucleus. Orthologous to human MRI1 (methylthioribose-1-phosphate isomerase 1).

NR:

description
PREDICTED: methylthioribose-1-phosphate isomerase

GO:

id name namespace
GO:0019509 L-methionine salvage from methylthioadenosine biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046523 S-methyl-5-thioribose-1-phosphate isomerase activity molecular_function

KEGG:

id description
K08963 mtnA; methylthioribose-1-phosphate isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300082.1 True 2070 mRNA 0.54 6 16170823 16178495

Neighbor

gene id symbol gene type direction distance location
pane1 cenpm coding downstream 19965 16146129 ~ 16150858 (-)
rab1aa rab1a,LOC107676578,LOC105021598,LOC107666439,LOC103035225,LOC108436370 coding downstream 43869 16118388 ~ 16126954 (-)
sertad2a NA coding downstream 58951 16106095 ~ 16111872 (-)
peli1a LOC108258444 coding downstream 101237 16056944 ~ 16069586 (-)
LOC117596132 NA coding downstream 119636 16045728 ~ 16051187 (-)
cc2d1a cc2d1a coding upstream 817 16179312 ~ 16200267 (-)
nanos3 NA coding upstream 29070 16207565 ~ 16208561 (-)
si:ch211-286b5.4 LOC108258440 coding upstream 30760 16209255 ~ 16216035 (-)
LOC113537690 NA coding upstream 46312 16224807 ~ 16236147 (-)
LOC113537406 LOC108258437 coding upstream 59714 16238209 ~ 16246291 (-)
G377087 NA non-coding downstream 1627 16165698 ~ 16169196 (-)
G376982 NA non-coding downstream 222744 15947648 ~ 15948079 (-)
G376961 NA non-coding downstream 287400 15881973 ~ 15883423 (-)
G376934 NA non-coding downstream 348318 15812366 ~ 15822505 (-)
G376840 NA non-coding downstream 391121 15778247 ~ 15779702 (-)
G377084 NA non-coding upstream 115 16178610 ~ 16179122 (-)
G377125 NA non-coding upstream 85408 16263903 ~ 16265647 (-)
G377171 NA non-coding upstream 170882 16349377 ~ 16350060 (-)
G377172 NA non-coding upstream 171754 16350249 ~ 16350459 (-)
G377191 NA non-coding upstream 210599 16389094 ~ 16390803 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other downstream 6453 16152919 ~ 16164370 (-)
vps54 vps54,LOC107709616 other downstream 185864 15963876 ~ 15984959 (-)
khsrp khsrp other downstream 228093 15929753 ~ 15942730 (-)
G376956 NA other downstream 250270 15917628 ~ 15920553 (-)
dpy30 dpy30,LOC107684266 other downstream 712618 15412424 ~ 15458205 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other upstream 38255 16216750 ~ 16221615 (-)
LOC113537389 NA other upstream 242766 16421261 ~ 16475431 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other upstream 387758 16566253 ~ 16583137 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other upstream 442672 16621167 ~ 16741989 (-)
G377416 LOC108258724 other upstream 666517 16845012 ~ 16851663 (-)

Expression


Co-expression Network