sertad2a


Basic Information

Item Value
gene id sertad2a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16106095 ~ 16111872 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300083.1
TGTGTGGGTGTCGGGTGAGAGGAGGCGCTCGCGCACAAGCCAGTGCAGTTGTGTGGCGCTGATCTCACTTCTCTCTCCGCTGATGGAGTGAAAAACAGCCCTCACAGCCGCCTCTCTCACCGTCTCCTCAAAACACACTCCCGGAACCGAGACATGACTCCGTCCCCGTGGCATTAAACTGCTCAGAGGAACTACAtgcgATACCTGCCACATGTCGTGTACGGGTCTGAAACGAACGCTGGAGCCGGAGGATAAGGACGAGCCTGATACCCAGCCCAAGATGGCAGCCGTATGGGCAGAGTCTTCCACAGCGTACTCGTGGCAGAGGCAGATGGTCCTGCAGCTCTCGCTTCAGAAACTGTGCCACGTTCCCTCTCTGGGCCGCCGTGTCCTCATTACTAACACACTCCGGCTCATTCAGGAGGAGATCAGCCACCAGGAGGCGCCGCGCCCGAGCCCCCCAGCCGAGGACAGccagatattttttaaacagcatcAAGCACTTGATGTCAGTTTAACCCCGGCGTGGGTTCTAGAGCAGGACGGTGAGCCGGATTTCTCTCCAGACTCTTTCATTTCACCAAAGGATGGGTTcgcctcttcctcatcctctctcttgGAACTGGACGCAAACAGAATCGAAAAAGAAACTCCAACGCAGACCATCTGCCTTGAGTCTCACTTGGACTTCGCCCAGCCCACCTTAAGCCACACCCCCTCACCAATAAACCCCTCCTTCCCCTCGTCATGCCCGATGTTCCTCCCAGACCCCTCGCTGGATGATTTCCTCCTCTCAGACCTTGACAACTACCTGTGCGACTTGAAACCCTGCACCTTGAACCTGAGTCCCAGCCTGGGCTCGCAGTCAAAGGTCGTCTCCATGGTGACGGACGACCTCATGAGGAGCTTGACGAACCAGCCGTTCAAAACGGACCTGAACGAACTGGAGCACATTATGGAAGTGCTGGTCGGATCATGaggccaaaaa

Function

GO: NA

KEGG:

id description
ko05164 Influenza A
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300083.1 True 988 mRNA 0.56 2 16106095 16111872

Neighbor

gene id symbol gene type direction distance location
peli1a LOC108258444 coding downstream 36509 16056944 ~ 16069586 (-)
LOC117596132 NA coding downstream 54908 16045728 ~ 16051187 (-)
LOC113537692 NA coding downstream 68120 16031999 ~ 16037975 (-)
LOC113537693 NA coding downstream 81584 16012272 ~ 16024511 (-)
LOC113537394 NA coding downstream 106101 15986787 ~ 15999994 (-)
rab1aa rab1a,LOC107676578,LOC105021598,LOC107666439,LOC103035225,LOC108436370 coding upstream 6516 16118388 ~ 16126954 (-)
pane1 cenpm coding upstream 34257 16146129 ~ 16150858 (-)
mri1 mri1,LOC107594353,LOC107703717,LOC106595636,LOC107700835 coding upstream 58951 16170823 ~ 16178495 (-)
cc2d1a cc2d1a coding upstream 67440 16179312 ~ 16200267 (-)
nanos3 NA coding upstream 95693 16207565 ~ 16208561 (-)
G376982 NA non-coding downstream 158016 15947648 ~ 15948079 (-)
G376961 NA non-coding downstream 222672 15881973 ~ 15883423 (-)
G376934 NA non-coding downstream 283590 15812366 ~ 15822505 (-)
G376840 NA non-coding downstream 326393 15778247 ~ 15779702 (-)
G376807 NA non-coding downstream 389149 15716192 ~ 15716946 (-)
G377087 NA non-coding upstream 53826 16165698 ~ 16169196 (-)
G377084 NA non-coding upstream 66738 16178610 ~ 16179122 (-)
G377125 NA non-coding upstream 152031 16263903 ~ 16265647 (-)
G377171 NA non-coding upstream 237505 16349377 ~ 16350060 (-)
G377172 NA non-coding upstream 238377 16350249 ~ 16350459 (-)
vps54 vps54,LOC107709616 other downstream 121136 15963876 ~ 15984959 (-)
khsrp khsrp other downstream 163365 15929753 ~ 15942730 (-)
G376956 NA other downstream 185542 15917628 ~ 15920553 (-)
dpy30 dpy30,LOC107684266 other downstream 647890 15412424 ~ 15458205 (-)
triobpa LOC108259073 other downstream 976839 15117512 ~ 15129256 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 41047 16152919 ~ 16164370 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other upstream 104878 16216750 ~ 16221615 (-)
LOC113537389 NA other upstream 309389 16421261 ~ 16475431 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other upstream 454381 16566253 ~ 16583137 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other upstream 509295 16621167 ~ 16741989 (-)

Expression


Co-expression Network