LOC113524905 (gpr108,LOC108413117)


Basic Information

Item Value
gene id LOC113524905
gene name gpr108,LOC108413117
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17919058 ~ 17942334 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300110.1
tggatagaaaaaaaaatgacggcGTCGAGGAAGTGAGTTCCTGGTTAGAAGTGGGAAGTTAATAAACAGCTAGTTAGCAAAGTAGCTACAAATACTTAGTTTTTTAAAGAGGGTGAGTTAAATTCAGCGGATAATCGACGATGATTTTACACCGTGTTGTTTACGTGCTACTTCCGGTGTTGGTGTGTTTAAGCGAGGCCAGAATACATCGCCTTACTCTGAAGAATGAAACGCGTTTCCTCGTCCACCTCAACACCTTCGGGTATTTCGCTAACGCCACTCTAGATGTCAACCTGCTGTCTCTACAGCTCCCTAAAGAGAAGGACGCATCCCCCCGTCAGgtgggctTCAGTCTGGCCAGGTCTCGGGTAAACGGTGTGTTTTCATACAcaACCGAGGACACGGACCAGTGCACTCTGTCCAAAACCAAGAGCGAGGACAATCTGATCCTGTTCATCATCGACCCCAGCAAACTGAGtgtcaGTGTGAAGGCATTCGGTGAGAAGGACAGTGTCTTACAGGCTCGGCTGAACAGTGAAGAAAATGTCTCTCGGAAGAAAAGAGATGACGCTAAATCAGACCCTAATTCAAATCAAAAGCCTGCCAATCCTGATAAAGTACAGAACACTAACGAGAATAATGCAGACACACAGAATGATGGGAAAGGGTCAGTAGACGCAGAAAGTAAAGATAAAGGGTCAGTAGACACAGAAAGTAAAAATCAAGGGCCAGAAGACGCAGCAGGTAAAAATAAAGGGCCAGAAGACGcagcaggaaaaaataaagggCCAGAAGACGcagcaggaaaaaataaagggCCAGAAGACGCAGCAGGTAAAAATAAAGGGCCAGAAGACGCAGCAGGTAAAAATAAAGGGCCAGAAGACGcagcaggaaaaaataaagggCCAGAAGACGCAGCAGGTAAAAATCAAGGGCCAGAAGACGCAGCAGGTAAAAATCAAGGGCCAGAAGAGGCAGCAGGTAAAAATAAAGGGCCAGAAGACGCAGCAGGTAAAAATAAAGGGCCAGAAGACGcagcaggaaaaaataaagggCCAGAAGACGcagcaggaaaaaataaagggCCAGAAGACGCAGCAGGTAAAAATAAAGGGCCAGAAGACGCAGCAGGTAAAAATAAAGAGCCAGAAGACGCAGCAGGTAAAAATAAAGGGCCAGAAGACGCAGCAGGTAAAAATAAAGGGCCAGAAGACGCAGCAGGTAAAAATAAAGGGCCAGAAGACGCAGCAGGTAAAAATAAAGAGCCAGAAGACGCAGCAGGTAAAAATAAAGggtcagcagaaatcaagaataatgaaaatacgCCTAAAGAAGACGCTCCTGGGAAAGTGGAGAAGACCAAATCTCTTAGCCAGGTGACAAGCATGAATGGAGTGTCGTTGGTCCTGAACCAGTATGGAGACACCTACAACTTCACAtttcATATCACTATGGGTGCTCAGGATCAGGGCCTGTACAGTCTGAACTTTCACTACTGCTCCAACAGCAGGCCTGGAGCCGTAAGCCCGTACTCCCTCAGTgtggagaTCAGAGAGAAGAACCCGGATGGCTTTCTCTCGGCTTCTGAGATTCCTCTACCGCGTCTCTACATCAGCATGGCTGCCCTGTTCCTCACAGCGGCCATCATCTGGACATCAACACTGCTCaaacacaagtacagtgtgtttaaGATCCACTGGCTGATGGCGGCACTCACCTACACCAAAGCCGTGTCCTTGGTTTTCCACAGCATTAACTATCACTTCATCAACATGGAGGGGCATCCTATCGAAGGCTGGGCTGTAATGTACTACATCACTCacctCCTGAAGGGGGCGCTGCTGTTCATAACCCTGGCTCTGATAGGAACAGGCTTCGCCTTCATCAAATACATCCTCTCTGACAAGGAGAAGAAGATCTTCATGATCGTCATCCctctacagGTGTTGGCTAACGTGGCGTACATCATCATCGAGGAGACGGAGGAAGGCTCGAGTGAGTACGCGCTGTGGAGGGAGATCCTGTTCCTCGTAGACCTCATCTGCTGCGGAGCCATCCTCTTCCCTGtcgtctgGTCGATTCGACACCTGCAAGAGGCCTCGACTACAGACGGAAAAGcTGCAATGAATCTGGAGAAGCTGAAGCTCTTCAGGCATTACTACGTGATGatcgtGTGTTATATCTACTTCACGAGGATCATCGCTATCCTGCTGAAAGTCACCGTACCCTTCCAGTGGCAGTGGTGCCAAGAGTTCCTGATAGAGGTTTCCACTCTGGTGTTCTTCGTGTTGACGGGCTTTAAGTTCCGGCCGGCGTCTAATAACCCGTACCTGCAGCTTCCTCAGGACGAGGAGGACCTGGAGATGGACGAAGTGGTGACGGAGTCGGGAGTGTTGGAGGGCATCTCGAAGGTGAAGAAGACGTCCAACGGccgagagagacatagagattCTGCCTTGTGATGATGACATTCCGGGGGGAGGAGCCTGGACTGTTAAACTCCACCCCCTTTATTCAGCCATTCCGCCTATAGTTGCTTCCAAGACATCTACAGAAGCGATCAGCTATGCAAGAGAGGGGGGAGGAAAAGCagggcagagtgtgtgtgtgggtgtgtgggtgtgtgtgggtgtgtgtgtgggtgtgcgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgcacgaaagaaagagagataggaATTTCTGAACTGTTTCCTTATAAGGAAATCGAATTTCTCCTTTAAAAAAGGGGGACTCGGAGCAGAGCCAAGGGACCGGTTTCATCCATTTATCttattttcttcacttttcCACCATCTGATCTGTCtcaccttctcctcctcctgtctttctctccttaTCCAAAGAGTTACaatcatttacagaaaaaaaaaaactttatttaaaggaacagtttagCCAAAAATGAAACTCTGGTAGTCGATCATCCAAGTGTGCTTCTTTATTTCTCACAGGCGCTACGAGGCTAATGTGCGATGATCTACGCATACAGTTTGCAAAACTGGAGGCTATAGGCTTCAATTAATTGTTAGCATTATTAGCCTCGCAGCAGCGCAAAAATTCGTGATGAAGAGGAAGTTGTAGATGTTAAATTTTTGTTCGAAATGTTCCTTTAACTGTGTTCGCTCTTAATTTAACCAAACGTTTTCTTCTCTTTGTCTGTGTTATTTAACTGATGATTATTTGGCGTgtttatggttttatttctgCCGTTTCTGTTAGCGTGTGTTGAAAAATCGAATATTTTTTGACTTGTCTTGACTCCATCAACTCCTGAACCTCAGCTACAAGGTCTGAGGAGAAGATTTGTGTTTCTGATGTGATCTCGTTAACTCGCCGCCATCTTAAGAGCCGATCCATAACTCCTAAGTTCAGGAGAAGTTCTTTGGTTGACGATCGAATCAGCGTCACTCTAGACCTCACACGAGAGGAGCACAAATTACCCAGAAGGCATTTCTGCATTACAGCACAGTTTCCTTTCAAAAACTCCTCTGTTTGCTGGAACTGCTCCACGTTCCTTTTGCACTAGCATGCTAGCAACGTCAAATAAAGCGCACACCAGCTATGATAGCAAGCTAACATAATCATAACAATCATAGCAGTTGTCATGCCAACTCGTTAGAATGCTCGAGAGGCGATTCTGACGGAGTTGTAGATGTTACACTCTTAAAAAGTAGAAAACAGTATTGAACCCAGAACTCGATTTGCTCCAGGTCCAGAACTGAGTGGATTAAGTCACGCTCCATGACCAGTTTAGAAAATCTGGTTTGATTGACAGCAGTTAGTCCCACCCCTTCATAtcattatgattttatttcctgGCACAAAGTTGGTCGAGTTATTTTAGTGAAACCATGAAAACACCTAGCGAAGGTTTGAACCTCCATGTTCACTTTGTATcgtcttttttttgtcctgttgtCTTGAGATCATGAGATTGAGATACCAAAAGGCTCGTTCCAaagtggacagctgaagacaTGACACCTTTTTCAACAGGTACACTTTCGCCTAAGCAATCGCCTCGTTCCGCAGTAAACAAACTagttatgctagctagctaagtatATACAAATCCCTGTTTCACTAATTTAAACTCATCAAACAACTAGTTAAATTCCTGACGGCCAACGTGAACATCTCAGCTACCTGTTTACCTCTTTGGCCTTTTAGCTTTTTCAAGAAGACAACTTGTTATCTCTGGATCACCAGGCAATACTAATAACTCATGGTCTTGCTGAACATCTGTAGAACATCTGTAGATGTTCAGCTTCGTGTACTTGGAGATGCTTTGGATTTCAGCTTCGTGTACTTGGAGATCCTTTGGATTTCAGTCTTGTGTACTTGGAGATACTTTGGATTTCAGCTTCGTGATACTTGGAGATCCTTTGGATTTCAGCTTTGTGTACTTGGAGATGTGGCGTTTTAGATGCTGGACCTGCTCGTCTGGGCTGCAGAGGCTCTGATGAGATCACATACCCAACTTTCTAACACGTTTTTAACATTAGTACAGTTGGAGATGGGATACACGGTACCTGTTGGAGAAGGTGTCCTATCTCGTACATGATCTGGTACGGTTTTGACGTCGATCTGAAACAGGGATTTTAGTAATTAACACCTGTATGAAGTGAGACGTTTGTTACATAATAAAGATCTtaattatgtaacatttttattccatttgtgaggaaaaaataagCCTGAATAAATTAGTGTAAATTAAATCACACTGTTACACGTTAGGGGACTCGCTTTAGTCACGACTTGCACATGATCGTTAAgatttaattacagaaaattaattaatacaggTGTTAATGACTATTAGCTATGGGTTATTAATGCTAATAGTTATAGAAGCGACGGCTAACAGCTGCGGCGTTGTTGTAAATGTTTACAGCATTGTCACTCCAAAATAGAGCAATATGACGTCAGGAATAACGACTGATGCAGTTCTAAAATCGTATGTTTCTGTTCACGCAGTTTTGGACTTGTGTTTCTGGAGTAAAGACAACATTTACGAGTATTTGTTTATCACGTGTTTGGTTGTTTGtcgtgtttttgtgtgtgtgtgttttccgtTTCTTTATAACCCTCTTCATCCACTCAAAGCAACTCCTGAGGAACTTCTACGTTTACCATCCAGATGAACCAAGATGGCCGCCGTTAAGGGGCTTGGAGAGTTAAAAGGGCTGTGAATTTTGTAAACACCACTGTCTCGCTGGCTTGTTTTTCCTCGCTAGCTTAACGTGATGGTATTTTGTTCCATTGTAAGGATgacctttaaaataaaacaaagtttaaatgtg

Function

symbol description
gpr108 Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and membrane.

GO: NA

KEGG:

id description
K22986 GPR108; G protein-coupled receptor 108

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300110.1 True 5334 mRNA 0.44 20 17919058 17942334

Neighbor

gene id symbol gene type direction distance location
LOC113524906 NA coding upstream 2795 17912389 ~ 17916263 (+)
LOC113524915 LOC108258795,LOC108258797 coding upstream 14976 17898843 ~ 17904082 (+)
LOC113524900 LOC108258808 coding upstream 25202 17890097 ~ 17893856 (+)
LOC113524898 LOC108258795,LOC108258794,LOC108258797 coding upstream 36885 17879085 ~ 17882173 (+)
LOC113524912 LOC108258795,LOC108258794,LOC108258797 coding upstream 50020 17849467 ~ 17869038 (+)
trnak-uuu_20 NA coding downstream 177331 18119665 ~ 18119737 (+)
LOC113524897 LOC108258756 coding downstream 230296 18172630 ~ 18175771 (+)
parn parn,LOC108258427 coding downstream 351424 18293758 ~ 18309052 (+)
LOC113524838 bfar coding downstream 426710 18369044 ~ 18375405 (+)
LOC117596190 gtf3c1 coding downstream 443593 18385927 ~ 18390650 (+)
G377709 NA non-coding upstream 31755 17885038 ~ 17887303 (+)
G377703 NA non-coding upstream 103952 17814531 ~ 17815106 (+)
LOC117596150 NA non-coding upstream 216315 17701668 ~ 17702743 (+)
G377652 NA non-coding upstream 319124 17595088 ~ 17599934 (+)
G377644 NA non-coding upstream 334015 17574761 ~ 17585043 (+)
G377723 NA non-coding downstream 14912 17957246 ~ 17957480 (+)
G377727 NA non-coding downstream 24884 17967218 ~ 17968950 (+)
G377738 NA non-coding downstream 65349 18007683 ~ 18008164 (+)
G377739 NA non-coding downstream 66613 18008947 ~ 18009156 (+)
G377742 NA non-coding downstream 67552 18009886 ~ 18048292 (+)
LOC113526395 NA other upstream 349591 17561445 ~ 17569467 (+)
LOC113525655 NA other upstream 743954 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 811069 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 901223 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 1064042 16822550 ~ 16855016 (+)
LOC113524903 NA other downstream 41152 17983486 ~ 18005140 (+)
G377747 NA other downstream 113290 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 120084 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 215759 18158093 ~ 18166225 (+)
G378105 LOC108258757 other downstream 340660 18282994 ~ 18287310 (+)

Expression


Co-expression Network