LOC117596142 (LOC108261577)


Basic Information

Item Value
gene id LOC117596142
gene name LOC108261577
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17244768 ~ 17249333 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300123.1
TCCTGCACAAGGTCGCTTCTAGCTGAAGTAGTTTTGGATTTAGTTTTGAGGAAGTCAGCAGCAGTTTATTAATTTGGCGCTGTTCTGAGCTGTTTATTCGGATGCTGTTGTTTAAGCTCTATGACAGCACTCACATACAGGCCtcaggattttttattttgttttaaaaatctgtttttggaTGTAAGCAGTCAAAGGCGGGATGTTTCCTAACGacaCAGCTCGAGCCCAgtcttcttcctctccttctgcTGGATTCTCTGTTGTTGTAAATGCTGAAAACGGCAGTATTGTTAATGTTCCTGCGCTCATTAACAGCACATTCTCTGATCATGTTGCCCTCAACATCAGAGGCAGCACTGCTTGCACTGAAACTGAAAAGGAAAACTTGGACTTGTCCACAGAAGTTCTACAGAAATTTTTGGCGAGTCACAAAGCCAACATAAAGAAGAAAATTGAGTGCATTTTTGAGGGCAAAAGGGATGCAAAAACTAAAATACTTCTGAAGAAGGTCTACACACAGCTGTACATCACCGAAGGAGAATTCAAAGAAGTTAACAAAGAACACGAGATCCTGAAAATCGACAAAGCTTTTAATGTGAAGAAAACTCAAGACAAACCAATCAACTGCAATGAGATTTTCAATGTTCCGGGgaaaagtgaagaaaataaaGTTGTGCTCACCAAGGGAATCGCAGGAATTGGAAAAACGGTATCTGTGCAGAAGTTTATTCTTGATTGGGCTGAAGGAGAAGCCAACCAATATATAGACTGCATCTTCTTCCTTCCATTCCGAGAGATTAATTTGATTAAAGATAAAGAATACAGTCTTCATGAATTACTGCAGGAATTCTACCCTGAACTGGAAAAACTCAGTGAAacaaatttgtacaaaaatCTCAAGCTTGCATTTGTGTTAGATGGGCTTGATGAGAGCCGTCTTCCGCTGGAGTTCAATGTCCATATGGTGAGAAGCTTAACAGAAGAAAGCATCTGTGAATGCTCTCATCACAAACTTGATTGAAGGAAATCTGCTTCCTTCTGCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300123.1 True 1048 mRNA 0.40 4 17244768 17249333

Neighbor

gene id symbol gene type direction distance location
LOC113525656 NA coding upstream 20602 17222700 ~ 17224166 (+)
LOC117596117 NA coding upstream 72622 17167068 ~ 17172146 (+)
LOC113525652 NA coding upstream 88395 17150751 ~ 17156373 (+)
LOC117596164 LOC108258770 coding upstream 174999 17062160 ~ 17069769 (+)
LOC113537674 LOC108258770 coding upstream 185149 17033943 ~ 17059619 (+)
LOC113526590 LOC108258777 coding downstream 5744 17255077 ~ 17262224 (+)
LOC113526801 LOC108258761 coding downstream 51609 17300942 ~ 17306270 (+)
LOC113526760 LOC108258765 coding downstream 58282 17307615 ~ 17320360 (+)
LOC113526630 LOC108258768 coding downstream 99620 17348953 ~ 17350873 (+)
LOC113526484 NA coding downstream 103626 17352959 ~ 17359864 (+)
G377529 LOC108258812,LOC108258801,LOC108258790,LOC108258798,LOC108258792 non-coding upstream 42150 17182776 ~ 17202618 (+)
G377499 NA non-coding upstream 136098 17108459 ~ 17108670 (+)
G377456 NA non-coding upstream 162357 17053358 ~ 17082411 (+)
G377452 LOC108258734,LOC108258759,LOC108258743,LOC108258770,LOC108258767 non-coding upstream 177336 17034906 ~ 17067432 (+)
G377447 NA non-coding upstream 194499 17009446 ~ 17050269 (+)
G377569 NA non-coding downstream 67227 17316560 ~ 17316971 (+)
G377604 NA non-coding downstream 166071 17415404 ~ 17427856 (+)
G377644 NA non-coding downstream 325428 17574761 ~ 17585043 (+)
G377652 NA non-coding downstream 345755 17595088 ~ 17599934 (+)
LOC117596150 NA non-coding downstream 452335 17701668 ~ 17702743 (+)
LOC113525655 NA other upstream 69664 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 136779 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 226933 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 389752 16822550 ~ 16855016 (+)
G377269 NA other upstream 680252 16561383 ~ 16564516 (+)
LOC113526395 NA other downstream 312112 17561445 ~ 17569467 (+)
LOC113524903 NA other downstream 734153 17983486 ~ 18005140 (+)
G377747 NA other downstream 806291 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 813085 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 908760 18158093 ~ 18166225 (+)

Expression


Co-expression Network