LOC113525113 (LOC108258806)


Basic Information

Item Value
gene id LOC113525113
gene name LOC108258806
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17746332 ~ 17751161 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300134.1
ATGTTCTGGACTCTCCTGCTCCCCCTGCTGGTTGAGAGTACTCCTTTTTCTCCGGAACTGTTCCCGACTGACTGCTCTGATGTCTACGCTAATGGACAAACACTCAGTGAAGTGTACACAATCTACCCTACAGGGGAAACACCTGTACAGGTGTATTGTGACATGGGCTGCTGGGAAAGCCGAACAGAGGATGGGAGTTGGACGGTGtttcagaggagaatggatgGCAGTGTGAATTTCTACAGACCATGGGAACACTACAAGAAAGGATTTGGGAACAAGGATGGAGAATACTGGCTAGGATTGGAGAATCTTTACCAACTCACACGTAGGAGGAAGTATGAGCTGAGAGTGGACCTGCAGGACTTTGATGGATCATCAGTTTATGCTCACTATTCCTATTTCTCTGTGGATTCTGAAGCTGAGGGCTACAGGCTCCACGTTAGAGGTTTCATCAATGGAGGTgcagGTGACTCTCTGGCCATACACAATGGACAGAAATTCACCACCTTGGACAGAGACCAGGACTTGTATGCACCAAAAAACTGTGCTAAACTCTTCCTTGGGGCTTTTTGGTACAACCAGTGCCACTATGCTAACCCTAATGGGATATACCTGAGGGGAAATGATGACACCCATTTTGCTATTGGAAATGTGTGGTACACTTGGAAAGACTATAATAATGGTCTTAAGTCCATCACTATGAAAATCAGACCTGTGATATAATGAGTCTTTATCACTGAAAAGCTATGATGTTCTCAAGTACATTACTAAGAAGATCAGATCTGAGTCTTCTGAGGCCTATGTGACTTTTTCTTGACATCACTTTTTGTATTTTGGTGTTTACTTTGATTttaaagatataataataatttagaatttaaattaaatttaactatttaataataatattttaaagggTTGTAATAATGTCTGTAAAGTATATTGCTGCAGTATTTGAGGTCTATATACATTTCTTCCAGTGTactgatgtaaaaatgaaatttatgaGCTGTAAATGAACAGAATAGTAGTTTCTAAGACCTtgtgaaattgaaaaaaaatactgcaaatgacatcaaaataaaaaaataaataaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300134.1 True 1104 mRNA 0.39 4 17746332 17751161

Neighbor

gene id symbol gene type direction distance location
LOC117596147 LOC108258809,LOC108258789,LOC108258806 coding upstream 5478 17738115 ~ 17740854 (+)
LOC113525124 LOC108258806,LOC108258809,LOC108258789,LOC108412240,LOC108413281 coding upstream 17768 17725933 ~ 17728564 (+)
pin1 pin1,LOC107571794,LOC107727173,LOC107685032,LOC107662743 coding upstream 22530 17713371 ~ 17723802 (+)
LOC113525128 vav1,LOC107571792 coding upstream 62203 17657678 ~ 17684129 (+)
dnm2b dnm2,dnm2a,dnm2b,LOC108258735,LOC107742527,LOC107571132 coding upstream 133458 17588633 ~ 17612874 (+)
LOC117596146 LOC108258789,LOC108258806,LOC108258809,LOC108413281 coding downstream 13125 17764286 ~ 17773365 (+)
LOC117596145 LOC108258809,LOC108258789,LOC108258806,LOC108412240 coding downstream 25691 17776852 ~ 17780086 (+)
LOC113525123 LOC108258810 coding downstream 38362 17789523 ~ 17794659 (+)
LOC117596140 LOC108258810 coding downstream 50456 17801617 ~ 17805521 (+)
LOC117596141 LOC108258810 coding downstream 58471 17809632 ~ 17813297 (+)
LOC117596150 NA non-coding upstream 43589 17701668 ~ 17702743 (+)
G377652 NA non-coding upstream 146398 17595088 ~ 17599934 (+)
G377644 NA non-coding upstream 161289 17574761 ~ 17585043 (+)
G377604 NA non-coding upstream 318476 17415404 ~ 17427856 (+)
G377569 NA non-coding upstream 429361 17316560 ~ 17316971 (+)
G377703 NA non-coding downstream 63370 17814531 ~ 17815106 (+)
G377709 NA non-coding downstream 133877 17885038 ~ 17887303 (+)
G377715 LOC108258746,LOC108413117,LOC107662713,LOC107560581,LOC107758383,LOC105903165 non-coding downstream 187106 17938267 ~ 17942279 (+)
G377723 NA non-coding downstream 206085 17957246 ~ 17957480 (+)
G377727 NA non-coding downstream 216057 17967218 ~ 17968950 (+)
LOC113526395 NA other upstream 176865 17561445 ~ 17569467 (+)
LOC113525655 NA other upstream 571228 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 638343 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 728497 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 891316 16822550 ~ 16855016 (+)
LOC113524903 NA other downstream 232325 17983486 ~ 18005140 (+)
G377747 NA other downstream 304463 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 311257 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 406932 18158093 ~ 18166225 (+)
G378105 LOC108258757 other downstream 531833 18282994 ~ 18287310 (+)

Expression


Co-expression Network