b3gntl1 (b3gntl1)


Basic Information

Item Value
gene id b3gntl1
gene name b3gntl1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16822550 ~ 16855016 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300141.1
GATTCACGCTCACGTGTTCTCTTGCCCAATCAGAACTCTCGGCTCGTCCAGAACGCGGAAGTGAAGGGACTGTTTTTACACGAGGTTGCTCCCGAATcgcgaataaataaataaaagaaagaaaaccaggCGAATGTTAGGAAGTGAAAGCATTTAGTGTCGGTTGCGCGTTACATCTCAAAAGTATATAAATGTAACAGATCaggcaaaaaggaaaaaaaaacctttttgtgtAGAACTGAAAGGGCCTGGCAGCATGACATGGAGTACAGTATAGCTAGACTAAACCCATGATCAAATAGCAAAAAGTGCATCTACAGTATATCATgactttatttttgcttttctaaGTTTATAAAGTCATTGTAGCGTCTCCTGCTGCTCAGATGAGCAGTCTTCAGAGGTGTCCAGGAGAACTGGAGGAGGAATGGAGTGGAGCAAAGAGGGTGTGCCTCAGGGTTCAACACGAGGACCTCACTACAGAGCCTAAAGCTGCCACTCTGGAGCGTCTCTCTGTCAATATGGAGTCCAGCGATGCCTCTAATGAGGTGAAACATGCCACTTTAGGATCTAAAGCTGCCAGTCTGGGGGCTACAGGTGCCACTGAAGAGGCTTTTGTTGCCACTGTGGAGTCTAAAGCTACCACGATGGAGTCTTCTGTTGTAGCTGCCATTTTGGAGGATAAAAACGCCACTTTCGGGGTAGAAGGTGCCACTATGGAGTCTTCTGTTGCTAGTCTGCAGTCTACAGATGACACTTTGGGGTCTAACACAACTTTATGGTGTAACAGTGCCACTTTGGGGTCTGACAGAGTGGCTTTGGAGTCTATTGATGCCTATTTGAGATCTAATGATGCTACTTTGGGGTCTAACCATGTCTCTTTGGAGTCTAATGATGCCACTTTGGAGTCTAATGATGCCACTTTGGGGTCTAATGATGCCACTTTGGGGTCTAATGATGCCACTTTGGGGTCTAATGATGCCACTTCGAGGTCTACTGATGCCTCTTTGAGGTCCAGTGATGCCTCTTTGGAGTCTTCCTTTGCTACTCTGAAATCTGTTGGTGCCTGTGAGAAGGTAGAAAGCAGCAACATTCAAGTGTCGGTGATCATACCGGTGTATAACGGTGCTAAATGGCTGGATGAATGTCTTCAGGCTGTTTTAGATCAGGACTTCCAGGGCACTTTGGAGATCTCAGTGTTTGACGACGCCAGTACGgataACTCCAGAGGGATTGCTGAAAGCTGGAGAGAAAGGCTGAGGATGAGAGGCGTTACCATGGTGATATCAGGCCATAATACAGACAGACcaagaggagTTGGATTTGCCAAAAACAAAGCTGTGGCTCAAAGCTCTGGACGATATCTGTGCTTCCAGGATGcgGATGACGTCATGATGCCCCAGAGAGTGAGACTGCAGTATGAAGCTGCTGTCCTGAACCCCGATACCATTGTTGGGTGTCAGGTGAGGCGTATTCCAGAAGGTTCCACTGAGCGCTACACCAGGTGGATCAACACACTCAGTCCAGAGCAGCTACTTACgcagGTCTACACCTCTCACGGACCAACGGTCGTCATGCCAACATGGTTCTGCTCGCGCCATTGGTTCCAGAAAGTCGGAGCTTTTGATGAAGGAGGCAAGGGGGTTCCGGAGGATTTGCTGTGGTTCTACCAGAGTCTTCGCCAGGGAGGGGGCGTGATCCGAGTGGACGAGTGTCTGCTGATTTACCGCTACCACGAGCATGCGGCAACACACTCTGTACTAGAGGAAACCATCTGGAACCTCCGAGTGCACTTCTTGGAGGAGAGAGTGCTCGGACAATGGGATTCATTCACCATATGGAATGCTGGGAAACAGGGACGGAAACTGTACCGCAGCCTGACATCCACCAATCAGAAGAAGgtgAAAGCATTCTGTGATGTAGATgagaacaaaattaaaaagGGCTTCTACACATATGAGGAATCAAAgGAACGTCCCAAACCCAGAGTCCCTGTGCTGCACTACAGAGACTCATCACCTccatttatagtgtgtgtaaaactggatATGACCGGCGGCGTGTTAGAGGAgactctgctctctctctgtttaacgGAGGGAGTGGATTACTATCACTTCAACTGACTGATGGACAGATAACGGAGAGAAAGAACAAGTGAAGATGTGACACATGAAGACTGAACCACAGACAAAAGGAAAAGAGttggagagaagagagagggaaatgggacatgttcgtgtgtgtgtgtgtgtgtgtgtgtgctcagtgttACTGTATGTAGCTGATAAGTGCAGCGATTAGAGAgcagctctgattggtcagcgtgcttttattgtttacttttcTCTAAACCTCAAAACACTCATTCATCCTgttatctgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgttagtgtTACAGAGTGTTGAAAGACAGGAGTGTGGCCTTCATGGGCAGGAGGCAGAcagaggaatgtgtgtgttgtgttaagGCATTATCTGAGGTCAGCAGCCACGTTCCtccctgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggaggggAGAATTCAGGGAGTCTGTCTGCTTAAATCAGTATGGAGAATTACTCTGATGTTTTTAtcccttttcattttcattttatttactcaaatgttttatttatttagtttttattcaaatatcaGCACTTGTGGTGCTGTTGGTGCTCTTAATAAAGTTACTTAAGTTTTTATGATC
>XR_004577315.1
GATTCACGCTCACGTGTTCTCTTGCCCAATCAGAACTCTCGGCTCGTCCAGAACGCGGAAGTGAAGGGACTGTTTTTACACGAGGTTGCTCCCGAATcgcgaataaataaataaaagaaagaaaaccaggCGAATGTTAGGAAGTGAAAGCATTTAGTGTCGGTTGCGCGTTACATCTCAAAAGTATATAAATGTAACAGATCaggcaaaaaggaaaaaaaaacctttttgtgtAGAACTGAAAGGGCCTGGCAGCATGACATGGAGTACAGTATAGCTAGACTAAACCCATGATCAAATAGCAAAAAGTGCATCTACAGTATATCATgactttatttttgcttttctaaGTTTATAAAGTCATTGTAGCGTCTCCTGCTGCTCAGATGAGCAGTCTTCAGAGGTGTCCAGGAGAACTGGAGGAGGAATGGAGTGGAGCAAAGAGGGTGTGCCTCAGGGTTCAACACGAGGACCTCACTACAGAGCCTAAAGCTGCCACTCTGGAGCGTCTCTCTGTCAATATGGAGTCCAGCGATGCCTCTAATGAGGTGAAACATGCCACTTTAGGATCTAAAGCTGCCAGTCTGGGGGCTACAGGTGCCACTGAAGAGGCTTTTGTTGCCACTGTGGAGTCTAAAGCTACCACGATGGAGTCTTCTGTTGTAGCTGCCATTTTGGAGGATAAAAACGCCACTTTCGGGGTAGAAGGTGCCACTATGGAGTCTTCTGTTGCTAGTCTGCAGTCTACAGATGACACTTTGGGGTCTAACACAACTTTATGGTGTAACAGTGCCACTTTGGGGTCTGACAGAGTGGCTTTGGAGTCTATTGATGCCTATTTGAGATCTAATGATGCTACTTTGGGGTCTAACCATGTCTCTTTGGAGTCTAATGATGCCACTTTGGAGTCTAATGATGCCACTTTGGGGTCTAATGATGCCACTTTGGGGTCTAATGATGCCACTTTGGGGTCTAATGATGCCACTTCGAGGTCTACTGATGCCTCTTTGAGGTCCAGTGATGCCTCTTTGGAGTCTTCCTTTGCTACTCTGAAATCTGTTGGTGCCTGTGAGAAGGTAGAAAGCAGCAACATTCAAGTGTCGGTGATCATACCGGTGTATAACGGTGCTAAATGGCTGGATGAATGTCTTCAGGCTGTTTTAGATCAGGACTTCCAGGGCACTTTGGAGATCTCAGTGTTTGACGACGCCAGTACGgataACTCCAGAGGGATTGCTGAAAGCTGGAGAGAAAGGCTGAGGATGAGAGGCGTTACCATGGTGATATCAGGCCATAATACAGACAGACcaagaggagTTGGATTTGCCAAAAACAAAGCTGTGGCTCAAAGCTCTGGACGATATCTGTGCTTCCAGGATGcgGATGACGTCATGATGCCCCAGAGAGTGAGACTGCAGTATGAAGCTGCTGTCCTGAACCCCGATACCATTGTTGGGTGTCAGGTGAGGCGTATTCCAGAAGGTTCCACTGAGCGCTACACCAGGTGGATCAACACACTCAGTCCAGAGCAGCTACTTACgcagGTCTACACCTCTCACGGACCAACGGTCGTCATGCCAACATGGTTCTGCTCGCGCCATTGGTTCCAGAAAGTCGGAGCTTTTGATGAAGGAGGCAAGGGGGTTCCGGAGGATTTGCTGTGGTTCTACCAGAGTCTTCGCCAGGGAGGGGGCGTGATCCGAGTGGACGAGTGTCTGCTGATTTACCGCTACCACGAGCATGCGGCAACACACTCTGTACTAGAGGAAACCATCTGGAACCTCCGAGTGCACTTCTTGGAGGAGAGAGTGCTCGGACAATGGGATTCATTCACCATATGGAATGCTGGGAAACAGGGACGGAAACTGTACCGCAGCCTGACATCCACCAATCAGAAGAAGgtgAAAGCATTCTGTGATGTAGATgagaacaaaattaaaaagGGCTTCTACACATATGAGGAATCAAAgGAACGTCCCAAACCCAGAGTCCCTGTGCTGCACTACAGAGACTCATCACCTccatttatagtgtgtgtaaaactggatATGACCGGCGGCGTGTTAGAGGAgactctgctctctctctgtttaacgGAGGGAGTGGATTACTATCACTTCAACTGACTGATGGACAGATAACGGAGAGAAAGAACAAGTGAAGATGTGACACATGAAGACTGAACCACAGACAAAAGGAAAAGAGttggagagaagagagagggaaatgggacatgttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
b3gntl1 Predicted to enable glycosyltransferase activity. Orthologous to human B3GNTL1 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300141.1 True 2791 mRNA 0.47 12 16822550 16842655
XR_004577315.1 False 2286 misc_RNA 0.48 13 16822550 16855016

Neighbor

gene id symbol gene type direction distance location
epn3b epn3 coding upstream 34448 16774704 ~ 16788102 (+)
mycbpap NA coding upstream 48128 16745847 ~ 16774422 (+)
LOC113537682 NA coding upstream 92234 16704378 ~ 16730316 (+)
LOC113537683 NA coding upstream 96822 16704811 ~ 16725728 (+)
tecrb tecr,LOC103047753,LOC107694603,LOC107573605,LOC107390378,LOC107703756 coding upstream 455153 16352485 ~ 16367397 (+)
LOC113537674 LOC108258770 coding downstream 178927 17033943 ~ 17059619 (+)
LOC117596164 LOC108258770 coding downstream 207144 17062160 ~ 17069769 (+)
LOC113525652 NA coding downstream 295735 17150751 ~ 17156373 (+)
LOC117596117 NA coding downstream 312052 17167068 ~ 17172146 (+)
LOC113525656 NA coding downstream 367684 17222700 ~ 17224166 (+)
G377271 NA non-coding upstream 139325 16627559 ~ 16683225 (+)
G377299 NA non-coding upstream 159480 16653177 ~ 16663070 (+)
LOC113537457 NA non-coding upstream 198553 16622129 ~ 16623997 (+)
G377262 NA non-coding upstream 264321 16524060 ~ 16558229 (+)
G377133 dnajb1,LOC107703757,LOC107594241,LOC107694604,LOC107714112,LOC107747146 non-coding upstream 474030 16348071 ~ 16348520 (+)
G377340 NA non-coding downstream 3328 16858344 ~ 16859322 (+)
G377440 NA non-coding downstream 140428 16995444 ~ 16995695 (+)
G377447 NA non-coding downstream 154430 17009446 ~ 17050269 (+)
G377452 LOC108258734,LOC108258759,LOC108258743,LOC108258770,LOC108258767 non-coding downstream 179890 17034906 ~ 17067432 (+)
G377456 NA non-coding downstream 198342 17053358 ~ 17082411 (+)
G377269 NA other upstream 258034 16561383 ~ 16564516 (+)
G377132 dnajb1 other upstream 477926 16302750 ~ 16344624 (+)
LOC113537689 NA other upstream 505039 16290730 ~ 16317511 (+)
LOC117596135 LOC108258437,LOC108443942 other upstream 582613 16235613 ~ 16239937 (+)
c26h19orf53 c26h19orf53,zgc:136864,cunh19orf53,clg6h19orf53,LOC107700848,LOC107598479,LOC107747197,LOC107703719,LOC107594354 other upstream 858245 15961378 ~ 15964305 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other downstream 145467 17000483 ~ 17017835 (+)
LOC113537672 LOC108258734,LOC108258743 other downstream 240850 17095866 ~ 17107989 (+)
LOC113525655 NA other downstream 301882 17156898 ~ 17175104 (+)
LOC113526395 NA other downstream 706429 17561445 ~ 17569467 (+)
LOC113524903 NA other downstream 1128470 17983486 ~ 18005140 (+)

Expression


Co-expression Network