LOC113535776 (LOC108258401)


Basic Information

Item Value
gene id LOC113535776
gene name LOC108258401
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1167628 ~ 1190548 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300142.1
AATAAAAGGTCCTCACAAGTCACTTTGTTAGGTTTCTATGCTTATACCAGCATTCGGTCCCCGTAAGTACAGCACTAAGTCACGTCAGAGTTTGAACGTAAACGAGAGGATTATACTCCCTGTATGTGACACCTGAAAGACGTTTACTCCTTGGGACATGTGGAGGTGACAGCCTTCAtgccaaaccacacacacacacacacacagggaatgCACACAGACTTACACACAGGCTTGTAGGACATTTGCTATATCAGAATTCTTTGTACCAAATGAAAGTGTTACTGGACAGTAACTGTGAGCAGaGTCCGTTGGGCTTATCATCTGTCGCAGCTCTCTCTCAGCTCCATTCTCAACTCACCACTGTTCTGCAGGAACATCAACAAAGCCCGAAGCAAAATGGTCACTGGCAGgcTGCCTGGAGCAGatgttttttgcatcattctgtgcGTTGGTCCAGTCTACACTGGCCAGGAGCTTTACTGACCACCCTGTGTGCAGCTAGCTTAATCACATGCCATGCCTTTGATCAAAACAGTGACGGCACAGCTTTGATCAGCGGCTGTGTTCTTTTGCTCCTCCTCTTGGCTGACCTGGTTGCCATGGCAGCTCTCCAGCAGCTGAAGACCTCGGAGATGCCACGTCGAGTGGAAACGTTGCTAAACACTTTACAGGACTTTTTGCTGCATCCACCTTCTGACTGGCTGAAAGACATAGAGGACCTGTTCGTCCCGTCCTTTCCTGCTGTGTCTTTACAGTGGACGTACCGAGACGGCCGATTGGTTAACATACCCGTCAGTCTCCTAGTGGAAGGTGACATCATCTCTCTGCGCCCAGGCAGCGAGGCCCCCACTGAGCTCAGGGGTATCCAGGAAGAAGAGCACGTCATCTTGTCTCAAAGTGATGTGTTCAGTCATCTCTCAAGTCCTCCATCCCCTCTGGATCATGAAAGGTCACGACCTCACCGTTTGCTCCAGCCTCAGCTTTTCAGAGTCACTCGAACTCCAGCGGTGGAAGTGGTTCAGAGATGTTTGGAGCTTTCTCAGCACAGACCTGTTTCCGTGTTGGATAATGAACGTTTCACAGTGCAGACGTTACTAGAGAGAGGTCCTGCTCCGCTAGCTTTGGTGGTGTTGCTGGTGCTGAACACACTGCGCTACGTTCTGGGAGCTCCTGGAGTAGGACCGTGGCATGTTACACTACTGCAGCtacctGTAAATGGCATCCTGCCGCTTTTACCACTGACCTTCCCGTTGCTCTGGTTACTGGTGGGAATATACGGGGAAGTGCGAGTCCTCCTTCAGATGGACCCTCAGCCAACAGCCTTGTGGgaagtgtggcAGCTGACGTGCGGCAGGTTTTTCTCCGTGCTTTTCGGACGATCTTCAGTGCTCTGTCACACAGCGAGTCTGCTGCACAACCTGGGCTCTGttactgtgttgtgctgtgttgatAAGCAAGGCATCCTGTCTTGGCCCAGTCCAAACCCAGAGAAGATTTTGTTCTTTAGCAAGACGCCGTCCTCAGAGAGAgtgaaacaaaaagagaaagaccgAGAGAAAACGAAAGATGAAAGCTCCAAACCCCGCCCCTACTGCAGTCTGGAGATGCTGAGTCTTTCATTGGACCGGGCGCACTTTGATGACACTCGGGTGCAGTTTGATGACATGCAGTGGGAGCGCCACGCCTCTTCTCTACGCCCGCTCGGTTTGGCCATTCAGCTGTTGCTTGGCGACACCGCCATGGCAACACGCGTGCTCCGCCTCTCCGATCACCTTACCCACGCTGCACTGCTGCGCACACGCCCACCCTGCCAGCCGGTTCGCCCACCCTGGGGCCTCTGCCAGCTCCCACAGATACTGGggttctCTCCTTTGGCCCGGGAACCTTTCCAACAGAGGATGAGCATGGCTGCCTACACCCTACCCACAATCCCTTGCTCTGGAGAGCCAGGGGTGATTGCCCCTCCCCCTGTTTCCATGAGACGCCTCCCGTTCTCACATCTCATCGCCCTGCTggtgcaccatgcacacactgGCGATTACCAGCTGTTTTCTTACGGCTCTGCCGATGCTGTCCTCAGCACGTGCTCTGAATTCTGGAATGGAGAAGATCTCCAGACCCTGACAGACTCAGACAGaaagaaGGTGGTGGATTTTTACCAGCGCTCCTGCATGGCAGGTCAGTGTGTCGCTGTGTCTTTCAAGCCACTGCTTCAACCTCATGATCCTGAGATAGACGGGACGTGTGTAGAGCTTCCAGCGAGTCTGAGCAACGAAGACGCAGaggatgTGTTTTTATCTCCGCTGAAGCAGCAGATATTCCTTGGCCTGGTTTCTTCTCAGTACCAGGCGAGACCTGACATGGTCAGACTCATCTCCGGACTGGACAGCGCATGCATTCGCTTCGTTTATTTCTCAAATGAGGAGGAGGTTCGGAGCAaggtgtttgcTGAAAAGATGGGATTAGAGACGGGGTGGAACTGTCACATCTCTCTGCAGTCAGAATGTTTCCCTCTCGATCcagaaaatattcatataacaGAAAGAGAGGAACAGGAATCGCATCTGATCGgggagtgtgtgaaagaggagGCAGAGTCAAGGTCGATGGAGCATGAAAGCACATGTCTGATTGAAGATTTAAACAGGGCCAAGCTGCCTAAAGGTATCGAGAATGTCCGGCCTCACCTGGAGAACATCGATAACGTCCCACTGCTGGTCCCTTTATTCACAGACTGCACATCTCagaccgAGCACGAGATGGTGTGTATCATGCAGGAGTACGGAGAAGTTGTGTGTTGCCTCGGCAGCAGCCAGAACATCAGCAACAACGCCATCTTCCTTCAGAGTGACATCAGCATCGCTCTAGAGCCGCTCGTCCCCACGTGCTGTCCGTCCAGCAACGACGTCCACCCGAGGACTCGGAGCAAATCGAGCGCTGTGAGTCTGAGTCAGCTCTCCAGCGCCATCTGTGGGTTAGCCTGCACTGTGCAGCTGCACCGAGAGGACAACAACGTGGTCATCAGACTGATCAGACagGCTCGCCACACCACGGCTGGGATCAGGAagtgtttcctgtttttgcTTCAGTGTCAGCTCTCGCTCGTTCTTATCCAGaTTCTGGCGTGTATGTGCCAACTGCCTCCTCCTCTGGCTACCAGTGATGTTCTCCTTCTCTCATGTTGTTATTACCCCTtgctcagTGTGTCGCTACTGGGGAAGCCGTCTGACAGCTCCATCATGAAGGTTCCTACCGGAAAAAATCTGAGATTCCTAccaaaaaagACGCTGCGTTTCTTCGTGCTCTGCTTCTCGGTGAAGTTTGGCCTGACTGTGTGCATCTATTTAACGTGCTTCGGCCTTTTACTGCACGCTTTCTGCCTGGAGATAAACCACGAAGACGAGAAACTCTGTCACCCAACAGCTCTGCTCATGTAtttgacagtgtgGTCCCCAGACTGGTACGGCAAACACTTGGACGGTCTTTCTCTGGGACAGAAAGTCGTCTCCTCGCTCGTTCTTCTCTACGCTATGTGTACGTCTGTCAGTCACGTGCATCGATCAGCACCTTTGTGGAAGCAAAACCCTCTGAGCAACCACAGCTGGTGTGCCGTCGTCTGTACACTACCCATCCTGAGTGTTTCCATAGCAACCGGTTCCCGCCTGCTCTGGCATGACCCCGCCCCTCACCACACTTTCTACCTCAGTGACGTACCGCTGGTAACCTGGTTGCTGGGAATCCTTTGGCTCCTCCCCctcatatttattaatgaaggaataaaaCTGCATGAGATAAGGGTGAGGGTGAGGTACCAGAAGAGGCAGAAGCTGCAATTTGACACCAAACTTGGAATGAATTCACCTTtctgacacacacgcacacacacacacacacacacacacacacacacacagtactaaAGCAGGACAGCCATAAGATGGCAGCTCTACACTACAAACACCAGATGCACTGACATCAGCGCTGAACTGATAAACACTCAtcatgtttgtcttttctgttaattttttaaagttttgttcTTTTAATTATCTCTGTTGACTTTGTGAGAAATAAAGTTGCATATTttattagatattttatttctgtactgTATTCATTGTTAA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300142.1 True 4127 mRNA 0.51 29 1167628 1190548

Neighbor

gene id symbol gene type direction distance location
cacna1hb LOC108258317 coding downstream 54029 1052390 ~ 1113599 (-)
myo15ab LOC108258396,LOC107725350,LOC107692700,LOC108441473,LOC108439093 coding downstream 141607 987755 ~ 1026021 (-)
alkbh5 alkbh5 coding downstream 181058 980870 ~ 986570 (-)
mief2 mief2,LOC108258856,LOC107722977,LOC107725398 coding downstream 188396 970792 ~ 979232 (-)
smcr8b LOC108258855 coding downstream 198011 963855 ~ 969617 (-)
slc5a10 slc5a10 coding upstream 14216 1204764 ~ 1246041 (-)
LOC113535431 LOC108258373 coding upstream 165175 1355723 ~ 1365906 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding upstream 321773 1512321 ~ 1518371 (-)
pard3ba pard3b coding upstream 428272 1618820 ~ 1738935 (-)
LOC113535707 LOC108258365,LOC108437114 coding upstream 704500 1895048 ~ 1909374 (-)
G369130 NA non-coding downstream 292425 871589 ~ 875203 (-)
G368944 NA non-coding downstream 466340 701084 ~ 701288 (-)
G368912 NA non-coding downstream 494598 671640 ~ 673030 (-)
G368903 NA non-coding downstream 585768 578593 ~ 581860 (-)
G368725 NA non-coding downstream 885725 281439 ~ 281903 (-)
LOC117596193 NA non-coding upstream 76158 1266706 ~ 1270425 (-)
G369243 LOC108258881,LOC108261507 non-coding upstream 86525 1277073 ~ 1277650 (-)
G369298 NA non-coding upstream 174815 1365363 ~ 1375213 (-)
G369297 NA non-coding upstream 179586 1370134 ~ 1396598 (-)
G369302 NA non-coding upstream 194373 1384921 ~ 1385662 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 218825 869759 ~ 948803 (-)
G369125 actb other downstream 251945 911553 ~ 915683 (-)
prkcba prkcb other downstream 465283 653453 ~ 702345 (-)
rasd3 LOC108258668 other downstream 575033 591136 ~ 592595 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other downstream 877720 284863 ~ 289908 (-)
G369242 LOC108258881 other upstream 85473 1276021 ~ 1276813 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other upstream 347905 1538453 ~ 1611666 (-)
G369586 NA other upstream 585771 1776319 ~ 1795224 (-)
mdh1b mdh1b other upstream 633656 1824204 ~ 1832729 (-)
LOC113535702 mx1 other upstream 1376209 2566757 ~ 2574471 (-)

Expression


Co-expression Network