LOC113525760 (zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398)


Basic Information

Item Value
gene id LOC113525760
gene name zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 19125834 ~ 19139249 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300154.1
atggtggtggcctttaAGCACGTTGGAACGGTGGCACTggtcagggaggtgttgaagatgtccgtgaaaacatccaCCAGCTGGTCTGTACACCCTcggagcaccctgccaggaatgtcatctggtccagcagccttccgcggGTTGACTCTGCATAGAGTATTGCTCACTTCAGCTATGtgtgcgtgtgtgtgtgtgtgtgcaggtcagaAGCCCCATCAGTGCAGTATCTGCTGGCGCTCCTTCTCCCTGCGCGACTACCTGCTGAAGCACATGGTGGTGCACACGGGTGTGCGAGCGTTCCAGTGCAGCGTGTGCAGTAAGCGCTTCACGCAGAAGAGCTCGCTAAACGTGCACATGCGCACTCACCGCGTCGAGCGCAACTTCTCCTGCACCGTGTGCAACCGCGCCTTCACCCACCGCACCTTGCTCGAGCGCCACGCCCTCCAGCACCAGCACCCGGCCCCGCCCATCAAACCCCCGACCAACCACGGAGCCATGGGCGGAGCCGGAGGGACCGGGCCTGCCCCCTAGTGGCCAAACTGAGAGCTCGGGGTGGACGCGCTAATAACGATTACCATCGTAATACCTGCtcaataattacataataataacaataataatattattattattattgttgttattattactattattatattattattaagacatttaacatttacatttattcgaTCATTAGTTCATAGACCACTGGGGGGGCGTGTCTTTAAGTCCATATAAGGACATAGCTAGCTATCATCAGCTACCATGACGAGATTTCTGAGAGTAATTTAAAGTGATGCTCGAATGTTAATTCGAGCATCATGaagcatgctaactagctacTTTGAGCTAAACTGACATAATCTTTgacatattttaaagaattttcaTTGCTGttctagttagctagctaatacaaGCTAATCTGACACGTTTCTGACAAGAATTTtaagtaatatttataaatgttcatagcCTTCCTAACCAAAGTTAGctaatatttagctagctaacgcaGCACAAACCTGAAAGGATTCATGAAAAGATATATTTAGGTGGCttcataaacattcataatctttagaaataaattaacGAATCTTTAGCTAAGCTAACCTGGCTAGCTGAAATGAGCTAACCTCAGTCACActcataaatgcattaattttcgctgctagctagctggctaacgttAGCATGAATGTTCACTGTGTTCACAGGAGatttagctagctggctaatgtgAGTGAAACAGACGGGATCTGTGAGAGAACTTTAAAAGCGTTTTAAAATCATATGTGGTCTCAAAGACACGCcgtatatttacaaatttaaataaatataagaatataaatatataaatctatgTGGTATGAAG

Function

symbol description
zgc:76872 Predicted to enable metal ion binding activity.
zbtb45 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm.

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300154.1 True 1387 mRNA 0.44 2 19125834 19139249

Neighbor

gene id symbol gene type direction distance location
LOC113524847 LOC108258823 coding upstream 20155 19034511 ~ 19105679 (+)
sp6 LOC108258788,LOC108418435,LOC108418467 coding upstream 451233 18664087 ~ 18674601 (+)
LOC117596189 NA coding upstream 598238 18523161 ~ 18527596 (+)
LOC113524839 NA coding upstream 621094 18498988 ~ 18504740 (+)
LOC117596190 gtf3c1 coding upstream 735184 18385927 ~ 18390650 (+)
LOC113525638 zgc:92827,LOC108258818,LOC107665919,LOC107758210,LOC107573835,LOC107668524,LOC107758399,LOC107573875 coding downstream 60778 19200027 ~ 19224919 (+)
LOC117596155 LOC108258581 coding downstream 128234 19267483 ~ 19283319 (+)
G378380 NA non-coding upstream 28221 19097408 ~ 19097613 (+)
G378369 NA non-coding upstream 120218 19005384 ~ 19005616 (+)
G378367 NA non-coding upstream 121789 19003744 ~ 19004045 (+)
G378361 NA non-coding upstream 152645 18972978 ~ 18973189 (+)
G378313 NA non-coding upstream 288723 18834447 ~ 18837111 (+)
G378387 NA non-coding downstream 30593 19169842 ~ 19170049 (+)
LOC113529661 LOC108258823 other upstream 103911 18946082 ~ 19021923 (+)
G378354 LOC108258755 other upstream 183506 18937500 ~ 18942328 (+)
LOC113525834 LOC108258740,LOC108412431 other upstream 303778 18781038 ~ 18822056 (+)
cdc37 cdc37 other upstream 515850 18602567 ~ 18609984 (+)
G378160 NA other upstream 629791 18494840 ~ 18496043 (+)
G378376 NA other downstream 556 19139805 ~ 19142137 (+)
LOC113525637 LOC108258744,LOC108413824 other downstream 3432 19142681 ~ 19168611 (+)

Expression


Co-expression Network