LOC117596155 (LOC108258581)


Basic Information

Item Value
gene id LOC117596155
gene name LOC108258581
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 19267483 ~ 19283319 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300156.1
gtACTGTGTAACTTCAGCATTCCTGCCTATGCCTGTTCATCAGTTGTTGTTCTAGCCTCTGATGATCTGGCCACACTGCTCACATGCAAACTGCCAAGCAGCCTGAACTACTCTAAAGGCGCTTGGAAGCTTTTCTTCCAGAATTTTCCTGGACCTTTGGATGATGTACTGGACAGGTTTTCAAACATGACCCACAGCAGCATTCGGCCTGACCCAAATATACTTGATGCCATCTGGGAGGTGATAATCAAGGACTTCACTGCAGCACAGCTGATGAATGCCACTTTCATCACTGAGTGGTTCCAGATGAGGCTCAGACCATTTTTGTCATCAGTGTCCACAGACTTTCTGTCCAGCCTCAGTTCCAAAAGCTTCAGCTGTGAGAGCTACCAGGCTGTGGTGGAAGCTCTTAGCAGTCAGGAATCACTCATGAAAGAGGAACAGAAGCAGTTGGTCTTTACTTCATTCATCTTTCCCTTCCTGTCAAGAGTTGACCTCCCAGACCCTGGCTGTCGTTCCAACACTTCTGGCAGCAATAAGTGGCTTGAAAAGAACCTTGGCAATTTCTCCAATTATGCCCCCTTGGAAAAGCTCAAAATTCTAAATGCAAATTTCTCCAGCGTTGCAGTGTTAGGCTTACTGTCCAGTGAGCAGAAGGCACAGTTCATCTTGCAGCCGGATTCAGGAGTGTTGGGaaatgactctgtgtttagagAGGTGTTTAGCAGTGCGATCACATCTTTAGATCGGAATCAACTTGGCAGCTTCTTGACAGTCTTCCACCAGACTGCAATACAAatgAACATGACTAGCATTCCTTCAGCAATATCAGACACCATTCTGAACATGACACTCTTGGATCTGGTGCCTCACTTCCAAAGTTTCAGCCCTGGGGACTTTGCCCTGTGGTTCCAGACTTacctttccttcttccttcctgGGATTGGTCCAAACACCCTGTCGATCATCCCCATGAACATCAGCTGTGACTCCTACAGAGAGATAGTGAAAGGACTTGATAATGTGTACAGTGACCTCTCTGCAACACAGTCCGACACTGTCTTCAATTACACACAAGACTATCTCAAGTACCAGTCCAGCCAagGCCTGAGCTGCTACGGCAGAGGAAGCTTCTACGTGTTCCTGAAACAGATGTTCCTCAATTTTGGATTCCCTGACCTGAAAGATTTCCTGTCTCTGATCCCAGCTGACCGACAGGCAGAGCTTTTGGGCTCCATCTCTCCGGAAGAACTCAGCGAGTTTCTGAACAGGCCAAACACAGTCATTGATGGTTCTGAGCTCTGCACACTCctcaacaactacaatagaaCCAATCAATACCTGGAGATGGGGTCTGTTTTATCCTCAGCTTTGGCCAGCCACACGTTGGGGTGTGTGTGGCCTCGTGCTCTCAATGCCTCGTCTCAGGCTGATGTAGAACAGTGGTTTAATGTCACCCTGGTTCACTACCTGCCCtacctcagttctcagctcatcAGCTCTGCCCAGCTCAGTGGCGCCTCCTGTCTGTCATACAGGAAACTGGTGTCTATCCTGGGGGACAACTACAATTTTTCCACAACTGATTTCACCCCAGCTGATGTGTATAGCTCCATAAAAGTGTATCTGAACAGCAGCGATGGCAGCCCCCGCTGCTATAACTCCTCAGATCCTCTTCTGAACTCCACCGCCTGGTTTGCTGACAACATCGGATTCTTCATCACTTTCATTAACCTCGCTGACCTGCAGTCATTCCTAACAGGAAACATGACGAGTGCGTTCCTGCAGAACGCAGAAAATCTTCAGCTGTTCAACAACTCAGGAATTTCAGCCAGTGTCCTGGAGTACTACACAACAGAGTTATACATCCAGAATCCTGACTTCAGCCCACTCGGATTGCCAGCTGAGCTGCTGTGTCGAACTccttcctccatgtttgttcACCTTGGAGATGCAGACATCAAGACCATCCTGACGAGCATCAACAACTTCTGCACAGAAATGAATCCAGAGgTCACAGCGGTGCTGGTAGCAAAGTTCCCCAATGTATCTGCATCCACCATCCAATCTTTGGGCAGCCAGTGTGTGGGCCTGACTGTGGGCCAGATAAGCTCCACCCCCTCCAGTGTGATAAACAGTGCTCTGTCTACACTCAGTAACATCAGTGGCTGGGACCAGGGCCAAGTGAATGCCCTGATCCAGAGCATCATTAGTGCGGGCTTTAATATCAGCAGTGCCTCCTCTCTGGAGTCCCTGGGAACACTCCTCGGTGGCGTTCCCTCTGCAACCATCTCCATCATCCCATCGTCTCAGCTTCTGTCTTTATCGCAGAATCCAGCATTCATCAATAACATTCTGTCAGCACCAGTTATTCTGCAAAAGACATTTGTCCAGAAGGTAATCTCTGTAGACCAAACTGAAGTGCTACAGAATGTTCCGGATGCACTCGTGATGTATATTCCACTTGTTCTACTGACCTCACTGAGCTCTGTTGACGTTTCACTCATCAATAACAAGAGCTGGAGTCACGAACAGGCTATGATGTTGTTTGGTGCAGTGGCCAATGCCAGTGATAATCCAGAAGACCTGTCAGCATCAATACTGCAGGGATTTACCTGCAGCTCACTTCAGACTCTCCCACAGCAGAAAGCCAAAGATCTAGTCAAAGCCTGTAGACCACGTGCAGGCAGAGACAAGGTCCTCCTGAAAGAGGCTCAGctGACCTGCATGTACAACTACGTGAAAGACGATCCATTTGTTAGCTTTACTGACGTCCCCTCTGATATGCTTCTGTACTACAGctaTGAGAAGATACAGAAGGAGAACTGCCAGTCATATTTCAGTGCCGTGGGCAGAGCAGATTTCTCCGTTCTTTCCCACAGCCTTGACAAAAAGACCATCCTGTTCAATGATGCAAAGGACTGCCTGGGTATATCTGGTGTGAGCCTGACCAGTTATCAGGTGGAGGTTCTGGGGAATATGGCCTGCACACTGGACTCCTCCTACATCCAGAACTCTCACCCTCTCATgttggagaaactgaagaactgTGGAGATCTTTCTGATTCTCAGATCACTGCTGTACAGTCTTTGCTCCTCAGTGGGAACACCGCTTATGGTAATCCCTCAACGTGGAATGAGCAGACCGTGGAGCAACTCAGCATCCTGGCTGTCTATTTCAAATCAGACCTCTGCAACGCACTTAGCTTTAATGTAAGGAGGAAGTTCTTTTCAGTCCTGAGGAAGCAGAAGATCCCGATGAAGAAGCTGAGGACATTCTTTACAGAATGCAACTCAGAAAGTGCTACAGTGAGCAACATCACAGCGGTGACAATTGCAGATGCGTCATTTCCTTTCGGCTTTAACTCCACCCAGTTTGATCTGTATCTGGACATCGCTGTCCTGCAGAACAACCTGGCAGCCATCACTGAGAAAGTGGTGGACACCAGCCTCCAGACCGTCATTCTGAACAAGTTAAACCAGatTTACCCATCAGGCCTTACTGATGGTGTGCTGCAGCTACTGGGATCCGCTTCTCGTGTGGCCACTATTGATGACATTAGCAAGTGGAACATTACCATAATTGACACACTGTCTTCTTTGATAGACTCAAATGATGGACTCTGGGAACCAGAAAagaGTAAAGCGGTTATTATGAGGTATCTGAGCATGGGGAATCGCTCTCTGGGAAGTGCTGAAATAAATGCAGTTGGTTCCAACATCTGTACTTTAAACATCAGTGTACTGGAAAATATCAATGCTGAGAGCCTAAAGGAGGTCCTGTTTCCAGATCTTTCCTCATGTACCATTGAACAGAAATCCGCTCTGTACATCACAGCCAACACTTCATTCAGCAATCAGCGCAGCAATGCCAAAACATACTACCAAATTATGAGACCTTACCTGGgtggaGCTCCTGTGGAGGATATACAAGCTCTTTCTACCCAGAACATCAGTATGGACATCACCATATTCATTAGTCTGGACCCTGCTGTTCTCAAgATCTTGAATGTGAGCACAGTGAGGGATCTAATGGGGGTAAACATAGCTGATCTGAAGCTGTTTGAGAACTCCTCAGTGGTTCAGTCCTGGGTGTCACGACAGAACCAATCTGATCTGAACACACTGAATCTTGGCATCATCAACCACAACCCTTGTTATGGTGTAGACAGTCACCCACTTGATAGCGAGTTCGCATCTGGAAATGTTTCTGCAGTACTGTGTAACTTCAGCATTCCTGCCTATGCCTGTTCATCAGTTGTTGTTCTATCCTCTGATGATCTGGCCACACTGCTCACATGCAAACTGCCAAGCAGCCTGAACTACTCTAAAGGCGCTTGGAAGCTTTTCTTCCAGAATTTTCCTGGACCTTTGGATGATGTACTGGACAGGTTTTCAAACATGACCCACAGCAGCATTCGGCCTGACCCAAATATACTTGATGCCATCTGGGAGGTGATAATCAAGGACTTCACTGCAGCACAGCTGATGAATGCCACTTTCATCACTGAGTGGTTCCAGATGAGGCTCAGACCATTTTTGTCATCAGTGTCCACAGACTTTCTGTCCAGCCTCAGTTCCAAAAGCTTCAGCTGTGAGAGCTACCAGGCTGTGGTGGAAGCTCTTAGCAGTCAGGAATCACTCATGAAAGAGGAACAGAAGCAGTTGGTCTTTACTTCATTCATCTTTCCCTTCCTGTCAAGAGTTGACCTCCCAGACCCTGGCTGTCGTTCCAACACTTCTGGCAGCAATAAGTGGCTTGAAAAGAACCTTGGCAATTTCTCCAATTATGCCCCCTTGGAAAAGCTCAAAATTCTAAATGCAAATTTCTCCAGCGTTGCAGTGTTAGGCTTACTGTCCAGTGAGCAGAAGGCACAGTTCATCTTGCAGCCGGATTCAGGAGTGTTGGGaaatgactctgtgtttagagAGGTGTTTAGCAGTGCGATCACATCTTTAGATCGGAATCAACTTGGCAGCTTCTTGACAGTCTTCCACCAGACTGCAATACAAatgAACATGACTAGCATTCCTTCAGCAATATCAGACACCATTCTGAACATGACACTCTTGGATCTGGTGCCTCACTTCCAAAGTTTCAGCCCTGGGGACTTTGCCCTGTGGTTCCAGACTTacctttccttcttccttcctgGGATTGGTCCAAACACCCTGTCGATCATCCCCATGAACATCAGCTGTGACTCCTACAGAGAGATAGTGAAAGGACTTGATAATGTGTACAGTGACCTCTCTGCAACACAGTCCGACACTGTCTTCAATTACACACAAGACTATCTCAAGTACCAGTCCAGCcaagGCCTGAGCTGCTACGGCAGAGGAAGCTTCTACGTGTTCCTGAAACAGATGTTCCTCAATTTTGGATTCCCTGACCTGAAAGATTTCCTGTCTCTGATCCCAGCTGACCGACAGGCAGAGCTTTTGGGCTCCATCTCTCCGGAAGAACTCAGCGAGTTTCTGAACAGGCCAAACACAGTCATTGATGGTTCTGAGCTCTGCACACTCctcaacaactacaatagaaCCAATCAATACCTGGAGATGGGGTCTGTTTTATCCTCAGCTTTGGCCAGCCACACGTTGGGGTGTGTGTGGCCTCGTGCTCTCAATGCCTCGTCTCAGGCTGATGTAGAACAGTGGTTTAATGTCACCGTGGTTCACTACCTGCCCtacctcagttctcagctcatcAGCTCTGCCCAGCTCAGTGGCGCCTCCTGTCTGTCATACAGGAAACTGGTGTCTATCCTGGGGGACAACTACAATTTTTCCACAACTGATTTCACCCCAGCTGATGTGTATAGCTCCATAAAAGTGTATCTGAACAGCAGCGATGGCAGCCCCCGCTGCTATAACTCCTCAGATCCTCTTCTGAACTCCACCGCCTGGTTTGCTGACAACATCGGATTCTTCATCACTTTCATTAACCTCGCTGACCTGCAGTCATTCCTAACAGGAAACATGACAAGTGCGTTCCTGCAGAACGCAGAAAATCTTCAGCTGTTCAACAACTCAGGAATTTCAGCCAGTGTCCTGGAGTACTACACAACAGAGTTATACATCCAGAATCCTGACTTCAGCCCACTCGGGTAA

Function

GO: NA

KEGG:

id description
K20733 MSLN; mesothelin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300156.1 True 6114 mRNA 0.48 45 19267483 19283319

Neighbor

gene id symbol gene type direction distance location
LOC113525638 zgc:92827,LOC108258818,LOC107665919,LOC107758210,LOC107573835,LOC107668524,LOC107758399,LOC107573875 coding upstream 42564 19200027 ~ 19224919 (+)
LOC113525760 zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398 coding upstream 128234 19125834 ~ 19139249 (+)
LOC113524847 LOC108258823 coding upstream 161804 19034511 ~ 19105679 (+)
sp6 LOC108258788,LOC108418435,LOC108418467 coding upstream 592882 18664087 ~ 18674601 (+)
LOC117596189 NA coding upstream 739887 18523161 ~ 18527596 (+)
G378387 NA non-coding upstream 97434 19169842 ~ 19170049 (+)
G378380 NA non-coding upstream 169870 19097408 ~ 19097613 (+)
G378369 NA non-coding upstream 261867 19005384 ~ 19005616 (+)
G378367 NA non-coding upstream 263438 19003744 ~ 19004045 (+)
G378361 NA non-coding upstream 294294 18972978 ~ 18973189 (+)
LOC113525637 LOC108258744,LOC108413824 other upstream 98872 19142681 ~ 19168611 (+)
G378376 NA other upstream 125346 19139805 ~ 19142137 (+)
LOC113529661 LOC108258823 other upstream 245560 18946082 ~ 19021923 (+)
G378354 LOC108258755 other upstream 325155 18937500 ~ 18942328 (+)
LOC113525834 LOC108258740,LOC108412431 other upstream 445427 18781038 ~ 18822056 (+)

Expression


Co-expression Network