pard3ba (pard3b)


Basic Information

Item Value
gene id pard3ba
gene name pard3b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1618820 ~ 1738935 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300163.1
gcgacagggagagagagagagagagagagagaaagagagagagaaagaaagtgaactCCGCTGAATTGGTTACACTTTTAATTGGAGGTATATTTCGCCTTTTTTTGGACAGGTGAGGATTTATTTGGAGAAGGAATTGTGAAGAAAAGCGGCTGAGAGCGGATTTGTGCCACACCTGAACTTTCCCCATGACACCTGTCgctggtgtttgtgttcagtcGCGAGCGCAAAGTAACACCAGGTGCACGGCGTCCATGTTGGAGCTGTTGTATGTAATATAGCgtcattattatttgtattattgtattattttattatcaataTCATTGTTTTTCACCGTGAGAATGAAAGTGACTGTGAACTTTGGGAGCACTGGAGTCGTGGTGCCGTGTAAAGACGGCTGGATTGTGCGGGACCTGATACACCAAGCCACTCAGCGCTACAAAAAAATAGTCGAACAGGATGGGGAGTTTCTGGTGCGTACACATCATGTGGAGTACGCTGACGGGGGGATTCTCGACCCTGACGACATGCTCACGGACCTGCTCGAGGACAAGGACAAGCTGATAGCGGTGTACGAGGAGGCGGAGCTACAGCCGAGGGCGGCGGTTAGCCCGGGGGGCAGCGTGGCGTCCGGATACTCCAGCCCCTACGCCTCCGAGCCCGAGCTGGGCGTCCTGCGGCCCGCAGTGGGCACAGAGATCGAGGTCACCTCCAGCACCCTCAAGTCAAACACGCCTCTGATGGTCAGGAGCAGCAGTGAACTGGTGCTGTCACGCTCACTGGACAACGGGAGTCGAGATACTGAAAGCAACGACAACAGACCAACAACAGCAACGggAGCAGGCCATGTGCTAACAGTGAAGGGTGGAACCATGGACACACTAAAAGAAGACATGAACAGGaagaccaacaacaacaacaacagcagcagCAGGCTCACCAGAACAGTGGAAATTTCTGGAGACATGGGACCTCTAGGAATTAAAGTTGTACCTTATCTTTCTTCACTGAGTGGGCGgccaCTGGGCCTCCACGTTAAAGGCATCGAGGAGAACAGTCGCACGAAGAGAGAGGGCATCTTCGAGGAGGACGAGTGCATCGTACAGATCAACGACACCGAGCTCATAGACACGTCTTTCGCTCAGTCTCAGGAGATGTTCCGTCAGGCCATGTTGTCCCCTGTCGTGCGATTGGAGGTCCTCCCCATGTCCAACAAGCTCCAGTACGAGAAGAGCCTCATCAGCCAGATATTCAGCAACTTTGACTCCGCCCACACCGTCGTCCCTAAACCGAAGAGTCCCTTCATGCTTCGGAAAGCCGACGTTAAATTCTCTGACCCCGCCCCTTCCTCTTCCCCCTCTTCTCTGACTCCGCCTCCGAGAGAGGAGCCCACCATGAGACGCAGCCCCATCTTCGTGGAGCGTCGTGAGCAGACCCCGCCTCCTCCCGTCAGTGCCTCGCCCACACCCAGGAGTCGCAGCGAAAGCCCCGCCTCCACAGTAAACCCCGCCCTTATCGCACTAACAAACGCTAACAAGAAAGGTGGCAGGAAGTTGATCAATTTAAGAAAAgGTCCCGACGGTCTCGGCTTCACCGTGGTGACCAGAGACTCGGCCGTTCACGGGCCTGGACCCATCCTGGTGAAGAGCATCCTGCCCCGCGGTGCTGCTGTGAAAGACGGACGCCTGCAATCCGGGGACCGCATCCTGCAGgtaaacGGAGTGGACATCAGCGGTTACAGACAGGAGGAACTGGTCGCGATGTTACGCAGCACGAAACAGGGAGAGACCGTCTCACTCTTAGTGTCCAGACAAGAGGAACCGTTCTTACCTCGAGAACtgAAAGGAGAGCCGTCTGGTCCAGTCCTGTCTGAGGATGGCCGAGAGCAACTGATGTATGAGATTCCTGTAAACGACTCGGGGTCAGCTGGACTCGGCCTCAGTCTGAAGGGCAACAAGTCCAGAGAGACGGGCGAGGACCTGGGCATCTTCATCAAGTCCATCATCCATGGAGGGGCCGCTTTCAAGGACGGGCGCCTGCAGGTGAATGACCAGCTCGTGGCCGTCAATGGCGAATCCCTTCTTGGCCGATCCAACAATGACGCCATGGAGACTCTGAGACGTTCTATGTCCATGGAAGGGAACCTGCGAGGAACCATCCAATTAGTTATCCTCCGAGCTATGGACCAATCCCCTGCCCAGGAGAGACGACAAGATGAAGGTCAGAGTCGGATGAGAGAGAGTTCCCCAGCTCTGCACACCCAAAATAACCTGAGCAACGGCGTCGCTCAGCCACCCATGGTGATCAACAGCATCTACGACCGTGTTCCAGGTCCCGTTGCAGCCTCCAATGGCAGACCCGGGGTGTATGATGACGACTCGGACGAAGACGAGTTCCCTTCTCCTCCTTCCGATATGGAGTCAGACGTCAACCCACAACGGAGATACGCACAAAACAGAGATGAACGAGAACTCGTCGGGAACACGGGACGTCCGACGCATCATCAGCTTCAAGACACACAGAGATCACCGGCACATCATACAACAAAGGCTTCCAAGAGCATGGACCTGgtggcgGATGAGGGCAACATTGGTGGCAGGCAAGCACACAcaccagCTCCCTTGACGTCTCTGGGACCGACGTTGGGACTCCAAAAGTCCAGCTCTCTGGAGAGTTTGCAGACAGCCATGGAGGAAGCCAGTAAGAGCAGCGTTCCCTTCCACCGGCCTGCCGGTCCTATGGTACGCGGCCGTGGTTGCAACATGAGCTTCCGGCAGGCCATCGACAAGTCCTACGACGGACCCTCGGAGCCTGAGGACGATTACTCCGAGGACAGCTCGGGCAGGGACACTCCAGTCAGCGGGTCCTCGCGCCAAGAACTGGAGGACGGAggcaaagagaaaaagaagaagaccaaaaagaagaaggagaagaagccCAAGACCAAGAAGAAGGATGATGCTGATGACCCAGAcaagaagacgaagaagaagggTTTTGGACTCTTGAGatttggcaaaaagaacaaaaccaaAGGAAAGTTGGGATCGCTGAGCGAAGAGGAGCTCAATAAGAGCGAATCAGAAATGTTAACGGAAACGGACATGGCAGCTCCGTCCCGTGGCCACCTGCCCGACGTAGAAGACGACGATTTCGACCCGAACTACGCTCGCATCAACACCTTCAGAGATCCGCCCCCTCCTAGCCACGCCTCCTATCCAAACCACATGCCCTCTCCTCATTATGTCCCACCCACAGGCCCCGCCTACAACATGCCTCCGACCAATGAGGACCCACGGGAAGGACTTTACGCCAAAGTCAACAAGATAAAGCCTCGCTCGCAACCAGCACCCGagagTAATGAAGCTCGTCTGCAGCAGATCCGGAGTCAGTTACAGCAGGTGAAACCTTCTCCATCGTACACAGAGTCAGGGGCAGGACACCGACTCCAGGAATATGATCCATCCCGGATAAGAGGCCCTGATCCCCGCATGGCTCCAAGATATGAAGACATTGATCGACATCATGCATCTGCACCCagACGAATGGCTGTGGAAGGCCACAAAGAAGCAGACCGCTACCTGAACCCTAGTCCGACCTACAACGCAAACCAAAACCCCCAGCCAGCCTCGAATCGTCCTGCCGTATCCCGCTCTGGACCTCATAGATACGACCTGCCGCCATCCTCCTCTCCAGGCCAGCAGGGGGTGCCAAGCTACGAAGCTGCGATCAAAGCTGGCAGTCGCATGGCTGGTCCCAATCAGTATGGTGCATATGAAGATGGGCAGTACCCGAACCATCGGACCAAGAACCCAGCCATCGGAGCTGTGTAGAATAAAAGTAGGCTAATTTCGAAGTAGGGCAGGGTATAGCTAGCCAGCCTTTAAACCTGTTCTTAAAGGTCTTTGTATAGTAAAATGTTCTTTCCTAAAGTGGGTCTATTCTGAATCGCTCTCTGCAAGGTAAATCCTCTTTGAAGACAACTTACAAAATCTCTCCTAGCAGTCAAGGTGACTAAACTTGGGTTCTATGCTTTAAGTTCATCCATAGAAGTAAGGGTCAGAGTAGgtttctcaagggttctttggataataaAAGGTTCTTCACTTCATAAAGAATATCTGTTTAGGTCTGCAAGGtaaaccatctttttttttttttttcttaagtatAGACTTTCCAAAATTTCTCATAATCACTCGACTCAACTTGCCCTTGAGTCAACAGGCATCTTCAGTTCATCCATATACCTTTGGTACCTTTGGTTTATCTCCAAAGAATCTTTGGGTAGCTTATTTTCCAAGTGTGTACACCAATCCCGAATGGTGCTAGCATcactctttaataataatacaacacaAAAAAGCTATTCCTAATTCGGAGCAGGGTAGGGTATAGTTAGCAACCGTTCAAAAAGGCTCTAGTTGCAAGAATAACCCATTTCATGGAAACTTTCATGACAACTTTGTGGTTTTTAAGTATAGACCTTGCAAAATCTCTTGTAGCAGTTGACTCGACTTTCCCCTCATCCACAGGCTTCTTCAGTTCATCCATACATCAAGGTCCCTGTTTAACTACatatccaaagaacctttagGTAGCTCTTTTTCCAAGGCTCTTACACCAATCCAGAATGTAGCTAGCTTCAATATTTATAGATTCCCCAGATAGACAGATCAGGAAACTTTAGGTTTCTAGATTTAACCTAGTGTTGAATAATACAGGCATAATCTCTGAGTCCTGTTCAGTAAACCTAGCActggttctggttctgtttCTTGCCTATATCTGGGAGTTTCTAAAAATTTTGAAGGAACATTTTATCTGCCTGATTTAAACAACGATGTATAAACGATGCAGGTTCACCAAATCCTagatgtagaaaaaaaacagtagttcTTTACTGTTGATGTGAATAGTTTGCCATGTTGTAAATATTCCTTTCCACTTATTGTGTTATATGCTGGAGAGATTCTCTTTAGTCTAGTCCCAGAGGCTTGGACTACAAATCAATTTGTATACtttgtgtagttttatataATCCATATGTAATTCCTGGTGCTGTTAGAGTCTAGTTTGTCTGTAGATAAACCGCTTGTCTGTGGTTTTCGATGGCCTTTATCTGTGTGGTTTCCCTCATAGCTTAAAGCTGTGGTTGGCCAGTGTGTGTTATCTGATGACTAACagtctctgttttctctccgTATTATCCCCAAGACTCTTGCTCTGAGCAGAACGACACCAGAATTTAGATGGTTAGCAAGAAAATGAGGACGCGTTACCAATTAGGTTTCCAAATTTTTcgtcttcttgttttttttcatgtagcTATGCTTGAagctttaaatctttttattttgcttccCTTTAATGAAGGAAGCTCCAGGGTGAGTGCAGTgccaaatggaaaaaaaagaggaatgtCTTGTGAAATTGTGTGAGGaggctgtcatttttttttttttttttattaaacctttCTCGATAGATAAGATGatatctgttttcttttattctgcGTTTTTATGGTGAGATGGAGCgaatttactttttctttttgaatgttggagacttttgcacatttttttaaaaaaatacttcttaCAGAGTATAAATTTTTACCATAAAAATTCCAAAACACAGCCATTTTGTCACCTTTCCAGTCTTTTCATGTTGTGTATGAACGAAGTGTGAAATTTCTGCAGCGGAATTTGAACCGGAAATGGAAGGTACTTTGAATTCTGCTTTTCTTTCCATGTATTTATTTcgaagttttatttttaaagaaagaacaaattatAAGAAATATGAAGCTATGATaaacgcgtgtgtgtgtttcatccaGAGGCATAAAAGGATTatctaaatgtgttaatatATTGAGAAATCAATGCGATGACATCACTGTATCATTGATGAACGAGTTGATTCTTTGTTACTGCATGTTTTTAAGaatgttttgcattaaaaataaatatcattcatGAATGA

Function

symbol description
pard3b Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in several processes, including establishment of cell polarity; establishment of centrosome localization; and establishment or maintenance of epithelial cell apical/basal polarity. Located in cell junction. Part of protein-containing complex.

NR:

description
PREDICTED: partitioning defective 3 homolog B-like

GO: NA

KEGG:

id description
K04237 PARD3; partitioning defective protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300163.1 True 5994 mRNA 0.48 24 1618820 1738935

Neighbor

gene id symbol gene type direction distance location
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding downstream 100449 1512321 ~ 1518371 (-)
LOC113535431 LOC108258373 coding downstream 252914 1355723 ~ 1365906 (-)
slc5a10 slc5a10 coding downstream 372779 1204764 ~ 1246041 (-)
LOC113535776 LOC108258401 coding downstream 428272 1167628 ~ 1190548 (-)
cacna1hb LOC108258317 coding downstream 505221 1052390 ~ 1113599 (-)
LOC113535707 LOC108258365,LOC108437114 coding upstream 156113 1895048 ~ 1909374 (-)
klf7a LOC108258322 coding upstream 176728 1915663 ~ 1937075 (-)
LOC117596168 NA coding upstream 517486 2256421 ~ 2259148 (-)
LOC113535651 NA coding upstream 522354 2261289 ~ 2271653 (-)
LOC113535598 LOC108258873 coding upstream 543856 2282791 ~ 2331670 (-)
G369523 NA non-coding downstream 30170 1538077 ~ 1588650 (-)
G369506 NA non-coding downstream 44155 1492699 ~ 1574665 (-)
G369305 NA non-coding downstream 221915 1396604 ~ 1396905 (-)
G369297 NA non-coding downstream 222222 1370134 ~ 1396598 (-)
G369302 NA non-coding downstream 233158 1384921 ~ 1385662 (-)
G369573 NA non-coding upstream 46618 1785553 ~ 1823504 (-)
G369596 NA non-coding upstream 64174 1803109 ~ 1805302 (-)
G369617 NA non-coding upstream 114414 1853349 ~ 1853782 (-)
G369618 NA non-coding upstream 115505 1854440 ~ 1854653 (-)
G369641 NA non-coding upstream 149569 1888504 ~ 1889374 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 7154 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 342007 1276021 ~ 1276813 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 670017 869759 ~ 948803 (-)
G369125 actb other downstream 703137 911553 ~ 915683 (-)
prkcba prkcb other downstream 916475 653453 ~ 702345 (-)
G369586 NA other upstream 37384 1776319 ~ 1795224 (-)
mdh1b mdh1b other upstream 85269 1824204 ~ 1832729 (-)
LOC113535702 mx1 other upstream 827822 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 1104277 2843212 ~ 2853211 (-)
G370658 NA other upstream 3104394 4843329 ~ 4889381 (-)

Expression


Co-expression Network