LOC117596162 (LOC108258591)


Basic Information

Item Value
gene id LOC117596162
gene name LOC108258591
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6326777 ~ 6330275 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300224.1
gTTGACGTTAGTACATTTCataattaacagcccttcctgagttgaagtgggtgttaGAGCTTGAAATTGCTAAACTGTGCAGTGAAACAGTacttgaaagagaaaaacatcagAGTTTAAGGTCCAAACCTAACCACTGGGCTACTTTGGGACATTTTGCTCAACTGTTTGCAGATTAGAGTCCTTTTACTGTTTGCAATGCTTTCCTGTTGGGCAAAGTTTCAACCCTGTTTGTATGTTTGCAGCACATTTCTTCACTATTTCAGTTCACTAGGTTCAGTTTCATATTTCTATAAAGTTTTATGCCTAAAAGCATGTGTCTGAAGAATGAATCCTTATATTACTACAACTTGAGAACTTGTGAAATTCTGACTGATATCTGCAACTAAAACACCAATTCGACAATAATTGTGAACCAACTGTTGAAGAACCttatcagttgtgtgtgtgtgtgtgtgtacacgagTGCATGCTTGTATAGACCTCGTGTTCTTGTAACGGGAAAATATATTGGGAGACGAGAGCCACAGCGAATGTGGCCAACAGAGCAGAGATAAAGGCAAAAAGAGAAAACCTTTCAGTAATAAAGCATTTGAGCATTTATCCAATTGGGATGGATTTTCAGTTATGGAGTTTCTtctgtttcacactgcacaGCTACTACCTGCTGACCATCGCTGACCAAACAGTTTTCCAGTCTGATCCACAAGCCAAGACCATCTTTATCCGGCCTAAACGTGCTAATACATTCTTTGTGGAGGAAATTCTAAAGGGCCATTTGGAAAGAGAGTGTTATGAGGAAAGATGCAACAAGGAGGAGGCCAGAGAGGTCTTTGAGGACAATGAGAAAACGGAAGAGTTCTGGAACATATACTATGATGGAGATCAGTGTAAACCCAATCCTTGTCAACATGGTGGCACCTGTAAAGACAAGATAGGAGGCTATAGCTGCAAGTGTACTGACATGTACACAGGACATAACTGTGAAAACGATGTTTCCGAATGCCCTTCTGGAGGCCCTCTGGTTTGTGAACACTACTGCAGACCCTTACCTGAATCATACAGATGCTTCTGCGCCAGAGGCTACAACCTTCACAGCGATGGCAGGAGCTGCATACCTTGGGCTCAGGATCCATGTGGGAATGTCAGGGTCTCATCTGACTCTACCAGTAGGAATATGACTCAAAACGACCCCATCTGCCCACAAGGAAAATGTCCATGGCAGGTGACCTTTGTGGATGTCGGTGGTGATGTAATCTGTCATGGCGTGATCCTTGGAAGGAGGTCTATACTCACTACAGCTGCATGCATGACAACAGACAAAGATCTTTCCTTGATCATTGGCCActcaaatgaaaaaataaatgcttctCAAGTGACCAATACTCCCCATGGTAGGTATTTGACTGGCAATCCTGATGACGACTTGGCATTCTTGGAGCTTAAGGAGCCAATTGCTTTGGGTCCGGGCACCATCCAGCTCTGCCTCCCAGAGAAGGATTTCAGTGAAAACGTCTTGATGAAAAGTGGTAAAGAGGGCATGGTAGTGGGTGGAGCCAACAAACTTTCATACCTCTCACTGGACGTCTGCCATTCCAAACTCAACCTGAGCTTCTCCTTGACCAATAAGATGTTTTGTATGGAGGGGAGAGAGCCTGAAGGTATTGTAAGGAGAcaacacaaaaagaaagagtGTGATCTTACATCTGGGTCTCCTGTGGCCACAGTGGAAGGAAATACAGCTTTCCTAACTGGACTGTTCCTCTCCCAAAATGACTGCAGTCAGGGACTTGTGTTCACCAAAATTTCGAGATATCTACCGTGGATCCGCAGACTTCTACTGAGAACCGAGGCAGTGCAAACATGACACATTCAGGCAGAAGCTTAGTCGCCAGGATGCAACTGTTTTAACAAGATTACATCAATTAACCTGCTTTCAGAATGAACCTGCTGTTTAATCataaaaattgtacaaaaacagtttattttacacagagaataaaaataattagtgaA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300224.1 True 2016 mRNA 0.43 8 6326777 6330275

Neighbor

gene id symbol gene type direction distance location
cul4a cul4a,LOC102780633 coding downstream 9318 6295380 ~ 6317459 (-)
lamp1a NA coding downstream 34030 6279824 ~ 6292747 (-)
tmco3 tmco3 coding downstream 88199 6226053 ~ 6238578 (-)
tfdp1b tfdp1 coding downstream 104222 6203697 ~ 6222555 (-)
grk1a grk1,grk1a,LOC107748333 coding downstream 126597 6191628 ~ 6200180 (-)
LOC113537543 LOC108258588 coding upstream 33537 6363812 ~ 6380175 (-)
f7i fa7 coding upstream 42100 6372375 ~ 6378994 (-)
f7 LOC108258589,LOC108429788 coding upstream 50054 6380329 ~ 6384799 (-)
f7l LOC108258590 coding upstream 54624 6384899 ~ 6392466 (-)
LOC113537540 LOC108258592,LOC108429813,LOC107739159,LOC107739162,LOC107751098,LOC107694465,LOC107570071 coding upstream 72987 6403262 ~ 6404088 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 321987 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 325164 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 327303 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 328618 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 332030 5993489 ~ 5994747 (-)
G371454 NA non-coding upstream 199122 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 233574 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 478218 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 537469 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 549595 6879870 ~ 6881780 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 293384 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 374464 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 779745 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 931765 5388904 ~ 5395012 (-)
G370658 NA other downstream 1437396 4843329 ~ 4889381 (-)
LOC113537742 LOC108258591 other upstream 28364 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 540291 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 728560 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 1026996 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1387988 7718263 ~ 7724795 (-)

Expression


Co-expression Network