cenpe (cenpe,LOC107751066,LOC107573438)


Basic Information

Item Value
gene id cenpe
gene name cenpe,LOC107751066,LOC107573438
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6162114 ~ 6190394 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300227.1
CGGCAGTTTGGTCGGTTGCTTGGGgagtttagtttattactgtagAGGCGCAGGACGGATATGAGGGAAAAATGACTGAAGAGTCTGCTGTTAAAGTTTGTGTTAGGGTTCGACCCCTTATAAAACGTGAGGAGGCGGATAATGCAGAGCCTGTGCAGTTGTACTGGAAGGCTGATAAACAGGCTATACATCAGATTGACGATGACGGCAACATGACCAAAAGTTTCAGCTTTGACAGGGTTTTTAGTGCAGAAGAATCCACCAATCAGCTGTATAACGACATCGCCAAACCCCTGGTGGTGTCCACTGTAGAAGGATACAATGGAACTATATTTGCATACGGACAGACTTCCTCAGGGAAGACTTTTACAATGATGGGCAGTGAGCACACCCCTGGCGTGATCCCGCTTGCCATGGCAGATGTTTTTCATACGATCAAAAATTGTCCAAAGAAAGAATTTCTTCTGCGTGTGAGCTACATGGAAATTTACAATGAAACAGTTACAGATCTCCTGTGCGACAGCTGGAAAAGAAAACCGCTGGAAATCCGCGAAGGCAACTACAAAAACGTCTACGTGGCTGATTTGACAGAAGAGCTGGTGACGTCTCCAGAACAAGCACTGGCCTGGATCCGCAAAGGAGAAAAAAACCGACATTATGGGAAGACAAAAATGAACCAGCGGAGCAGTCGCTCTCACACCATTTTCCGCATGATCttggagagcagagagagaagtgaCCCAGCGTCTGGGGAAAATGCAGACGGCGCCATCATTGTGTCCCATTTGAACTTGGTGGATCTTGCTGGGGCTGAACGAGCGAGTCAGACTGGAGCTGAGGGAACCCGGTTCAAAGAGGGATGCAATATCAATCGCAGTCTCTTCACTTTGGGACAAGTCATCAAGAAACTGTCTGATGAGAGCCAGAAGGGTTTCACAAACTACAGAGACAGCAAACTAACCCGGATCCTCCAGAATTCTCTGGGTGGCAACGCCAAAACGGTCATCATCTGCACCATCACGCCAGCTACTGTGGATGAAACTGTGAGCACTTTACAGTTTGCCAGTGCAGCAAAGCGCATGAAGAACGATCCTCATGTCACGGAGGTCTCAGACGACGGTGCTCTTCTGAGAAGGTACCGCAATGAAATTGTGGATCTCAAACGACGTCTTCAAGAGGTTTCTTCAGTCACCCAAACAACTGTGACTGAGAAGGAGACACTGTTCCAGCTCCTACAAGAGAAGGATCAACTCCAGAGAGACCAAGCAGATAGAATAAGGAACCTAACAAAGCTGTTGGTAACAGCATCAAATGTGGTTCCTTTCCAAAAGATTCCCAAGAGAAGAGTGACATGGGGTGGAAAGCTCTTCAGATCAGCTCCGTTAATGTCAGATGATTATGGATCTCCTGATATGAGCTTTGCTGAGCCCTTTTTCAAAAAGAGGAAAGCTGATCTTACTGTGACTGAAGAGAGTGAAGaCATGGAGGAATTTGACACAGCACCAAGTTTTTACTCCCCTGCTGAGGACACCTCCATAGACCTGGAGATGAACCAGAGTAACGTTACAATGCGCAGCTCTGCAGAAGGCGTGTGCACCGACTCACCCCAGCTCATGTTCAGAGTCGAATGTTTGGAGCGTCAGTTGGAGGCAGAAACTCAGGAGAAGCAAAAGGCTGAAGAGAAGAGTGCGACGCTGGAGCAGAGGACAGAAGAGCTTGAGAAACAATTGCAGGCCTTAGAGCAACAGCTGGAGACAGAGGTgcaggaaaaacagaaagctgagcaGAAGTGTTCCACGCTGGAGCTGAAGGTCGCAGACCTGGAAAAGCCTTCAGAGCCAGAGAAGGACGACAAAGCCTGTGAGCAGTACTTTGCGGAGGCTGTCCAGCTCTGTCACACGCTGAGCTCTGAGAGGgaagtaattGCTGCAGAGAGGGACATGTTGAAGCAAAGCCTTGAGCTCCTGAAGCAGGACATCGAGAGACTAAAACAAGACAATGAGGCGCTGATGAAAGACAAGGAGACTCTCCTGAGAGACATTGAAGAACGGAAAGACGCAGAGGAGTTTGAGAAGCTTGAGGAGGAGAGCAAGAAAGACTATGAGCGAGAGTTGGAGGCTGAAATTTCAGCTTTGAAAACGGCTTCGACAGATGCAGAAGATCTGGTCCAAAAGCTGAAGGCTGATCTGGAGGTGATGTCCGAGGAGCTGAAAAAGAAGAACGACTTGGTGGCTGACCTGCAGAGTTTGAACGGTAAGGACCTTGTTCAGGAGGTAACGCGGCTACGTCGCTCGTTAGACGATGCAGAGGGGCTCAGTTTGGAAACCAAAAAGGAGTGGGCTTTCCTGCGTAGCGAGAACATCTCCCTCAAAGAGCGAGATGAGACTTTGAGTGTTCAGTACAACCAAATGGAGAATGAGGTCAAATCCCTGCAGAGCCAACTGGAGCATGAGAAATCCCGATTCAAGAAAATGCAGGCTGACCTCCAAAAAGAGCTGCTTGGGGCTTTTGATGAGAACACCAAGCTCACTGCTCTTCTGGATGGAAAAGTTCCTAAAAATTTACTGGATAACCTGACGTTGGAGAAAACAGTTGCTGAATTAAAGAAGGAGCTTGAGAAGAGccaggagagtgagagagctcTGCAAAGCAAAACGGAGGAGTTAAAGGCTCTAGAGATTCTTCcagctaaagtggatgatttgTTGAGACAGGTGTGTGAGCTCACTGGTGAACTTTACTCTGTGCAAGAGGAAAGGGACAATCTTGTCTCTGCTCAGGCTGCGTCCAGTGAGGACAGTGAGAGACTGAAAGGAGAGGCTGTAAAGGCCCAGGAGGAACTTGAGAAAATGCAGAAGGATTTGGCAGATGCAGAACTCAAGGAAGTTCAGCTAAGCCAACAGCACACCGAGACCACAGAGCAGCTTGCAAAGGTCCAAACAGATCTGGAACACCTCTTGGAAGAAAACAGGAGTCTCCTCAGTGCCTTGGAGGAAGCCAAGCAGAAGGAACTGGAATCACTTCGCTGTGAAAGAGAAAGGCATTTGTCAGAGCTGACCGCTGCAACTGAAGAGAGGAACCAGCTTCAGGAAGCAATTCACAGCAAAATTTCTGAGCAATCTGAGCTTGTTCACAACCTGCAAACAGAGCTGCAAACTGTTAAGGAGGAGAGAGATCAACTGAAGAGAGACATGGAAGAAAATGTGGAGCTGATGATAGAAAATCAAGAAGAATTAAGGGCAGCTCTGGAGACGGCAAAAGTGCAGCAGGACAAAATACTTCATTTGGAAGCGGAAAAAGCTCAACTGGAGTCCAGACTGTCGAATCCAGCTGAGAACAGTCTTGTTGAGGATCTGCAAATTCagGtgaagcagctgaaagaggagcTGCAGTCTGTGTGTGCAGAAAGAGACAATATTGTGTCTGAGAAAGCCCTTGACTCCGAGTTGGAGAGGATGCAGTCCAATATCAGCTCTCTAACTGAAGAGAGAGACCAGCTCCAAGAGATACTGCAAGGactgagagaagagaaaagccAGCTGaagagagaaatggaggaaaaagaTGAGCTGATCATCCGCTTCCAGTCGGAGATGAACGAGAAGCAGTTTTCGGACTCGAATTGCATTATTAATGAGGAGAATGAAGTTCAGCTACAACAGATGCAGGATCTTAAAAAGGAGGCTGAAGAGTTGACGCAGGAGAATTCCTGGCTGAGAACAGAACTTCAGGACATAACTGACAAGGTTAATGAGCTCTCAGGAACTCTCAGTGCTGTGCAAGATGAGAAGAGCAGTTTGCTTGTTGCTCAATCCACCTTGAATGAAGAAAATATAAGACTTAAGGAAGAAATGGAAAAGGCCCAAGAGGAACTTGTCAGGATGGAGAGTCAAATGATTGATTCACAGCTGAAGGAAGCTGAAATCAGCCAGCAGCACATGGAAACCACTGAGCAGCTCGCAAAGGCTCAGGCAGACCTGGAGCACTTTACTGTGGAAAATAGCAAATTGTTCACGTCTTTAGAAGAAGCTAACCAAAAAACAGTGCAGTTGGATGAAGAACTCAAATCTCTTCATTTTGAAAGAGAACAGCTTCTGAGAGAGAAGATGGAGGGAGCTTGTGATCAAGAAGAGGTAGAGAGCCTTCGTGCCACAGTTACCTCCGTGACCGAGGAGAGGAACCAGCTTCAGGAGATTCTTCAGGGTCTGAGAGAAGAACGCAGCCAGCTGAAGAGAGATCTAGAAGAGAGCAATGACATGCTCATACAGGTGCAGGAGAAACTAACGCAGAGTGAGATCAGTTCACAACAAGAAGCCACATGTGTGCAAGATGAACTTCAACAAGTACAGCAGCTGCAAGAGCAACTCACAGCACTGACTGAAGAAAATCACCAGCTGAAGATGGATGCTGAGGAAAATGTGGAAATGATGATTGAGACTCAGGCAGAATTGAGGTCAGCACTTGCGAATATAAAGGAACTAGAGCAGAACATGCACGAGCTGGAAGTGCAGAAGACTCAGCTAGAGTCCAGAGTGTCCCAGACAGACAGCAGTGAGGAGAGCAAACATGTGGAGGATCTGAAAACTCAGATTAACGATCTGAGTGAAGAACTCAAAGCAGTTTATGAGGAAAAGCAGCGTCTTCTTTCCGAGAATGTACACTATGATCATAATAGTGAAGAGCTGGAGAGAGTGAGGATGAACGTCAGCATTCTGACTGAGGAAAGAGACCAACTTCTGGATGCCTTGCAGGGcctgagagaagaaaagagccAGATAAAGAATATCCTAGAAGAGAAGGAAGACATGATTATGCAGCTGAGAGAGGAGCTTGAGTCTGCAGCTGCAGAGAGAGACGAGCTTCTGAGTGGAAGAGCTAAAGACGCTGTGGAGGATGCTGCCCTGGAGACGATTCAGACGAGTGTATCCGCTCTCTGTGAAGAAAGAGATCAACTGCTGGAGATCCTGCAGGgcctgagagaggagaagaacCAGATGAGCAGTGAGCTGGAGGAGAAGAATCATAGGCTGATGCAGTTGATGGACGAGCTCCAATCTACTACAGCCGAAAACTTACTGGCTGAGAAATCTAAAGATGACCTGGATAACAGAGCCGAGTTGGAGAGACATCAGGTCAGTATCGCATCTCTGACTGAAGAGAGAGACCAGATGAGTGAGGAGAATAAACAGCTGAAGACTGAACTGGAGGAGTCCAATGAAAAGGTGATGCAGTTAAGAGAGACGCTTCAGTCTACAAGTGCAGAGAAAGAGCATCTTCTATCAGAGACGACCAAAGAGAGTCTTGCTCACATGGCTGAGCTCGAGCAGATCCAGGCAGATATGACCTCCGTGACTCAGGAGAGGGACCAGCTTCTGGAACTGCTGCAGGACCTGAGGGAGGAGAAGATTCAGCTGAAGAAAGATCTTGAGGAGAAGGACGAAATGGTGATGCAGCTGAAGGAGGATTTTCAGTGCGCTAGTAACGAGAAGGATCGTCTCATGGCTGAAAATGCTAACTGCAACCTGGAGAACATTGAGAAGCTGGAAAGACATCAAGCAAACATCATGTCTCTAACTGAAGAGAGAGACCAACTTCTAGAAGTGCTGCAGGGTATGAGGGAGGAGAAGAACCAGCTTAGATCAGACCTGGATAAGAAGGATGAAATGATACAGCAGCTGCAGGAACTCCAGGCGGAGAGAGAGCAATTACTGATAAAGGATGCATCGTGCAGCACTAATGCGAATGAAGATGGAGACAGTCTCCAGGAGCTATTGCAGGGAGTGAGAGAGCTCATCCAGGTCCAAGGCGAGTGGAAGCAACAGAAGCCACTGAGTCCTAGAGCCACCCGGAAAGCTGAGCTTCAACAGGCCAATCAAATCATGCAGGCTCTTAAGGATGAAGTTGAGTATTTAAGGAACGAGAGGGCGTTACTCAGAAAGGATCTTCAGGAGGCTGCTGAAACGTCAAAAGCCTATCAGAACTTACTCCATTCTGCGAGGGAGGAACTGAAGCAGCAGCAGAATGCTGACTCCATGGCCCAAAGTGCTGAAAAGGACTCTCTACTTCAGCAGCAGATGAGTCAGCTGAATGCAGATCTTTCGAATTTGAGAGAACAGCTTTTGGTGAAGAATACCTCCGAGACTCAGAATCTCAACACAGAGGTGCAGAACCTTCTGACTCGCATTGCGTCTCTTGAGGAAGAAAAAGCGAAACTCCAAGAGATGCTCGAGTCTGCCAGAGAAGAGGGAACTAACCTGAGACGTGATCTTCAGGAGAGTGAACAAACGaAACACAAGCTGATGGAAGAGCTTGAAAGTCTTGGTGGCATTAAAGAGCAGCTTCTTAATGAAAAGACACATGCAGATCAGCTCCAGGAGGTTTTCCATGGGgtcagagaagagagagaccaACTCAGGAGGGAGCTGGAGGAAACAATGGAGGAGCTGACGCACATTGAGGAAAAGGTACAAGGActagaaaaggagaaaatgctGCTTGAATCTGAAGTCAGTACTTTGAGCCAGTCTCTTCATGAGGTGAATGAACACACTAATGCACCATCTAATGAAGAAAGGCTGAAGGTGATCTCTGAGATTGAAGCCTGTAATGAAAAGCTTAAGGTTGCCTTCTTGAAGCTCCAAGCGATCATTGACCGTCCAAAACCCAAAGATCATCTTGCAGATGGCAATAGCAAAGAAAATGCCTTGTTTTGTCAGCTGTTACCGTTTGTTCCGATGTCTTATAGAACTGTGTTCACTTGTCTGACTTCCAAAACAAGTCATCTTGATGACCTGCTTAGGAAAAATGAGGTGGCCTTGCAAAGACTCGCAGCTCTGCACAAGACCCACTTCATGAAACAACTTCACCGTGATGTGGCTTCCTTTGAGGAGAGAAGGCTGCTTGATGTGCTTATTCGCCGAGCTCAGGTTCCTTCACAATCCCTCCAGATGCTCCCTGGGGACCTCCAGGAGATTTGGGACCAGAGACTGTTGGAGCTGTTGGACAAACGCAGGCAATATCTGCAGAACATGAACAGCATTCTGGACTTCCTGGAAGACGCTGTTGCCAAACATGCAGTCACACTCTCGGAGGAACTTCAGGCACGGACCCGTGCCAATGAGGAGAGTAGAGTGCTGGCTGGAACCAACACAGCAGCTATAGTTCAGTTCTTCGAGCGAGAGCTTGTTCGACGCACGGCTTTGACGGACCGCCAGAGAGTTTTCCGCCAAAGCATGTTGGATAAATATGGCTCTGCAGTTTCTGTCCTGAAGCCCTTGGAGGATGAGTCGATTCAGAGACTGACGGAGGAGAGGCGTGAGAGTCTGGCACTGCTGCCATCTCAGGGCAGTGAGAAGCCCAAAACTGAGGCAGACCTGCTGCAGGACAAGCAGCGCCTCTCCCTTCAGTTACAACAGACTCAAAAACACTTAGAGGAGCTCcaaaagaaaatggaggagtTGAAGACCCACTCAGATGTTTCGAACCAGAAACACGCTGCCAAGCTTGAAGAGCTGAGCTCGGCTTTAAAGGAGAAACAGGATCTCATCCAGAACCTGCAAATGAAGCTGAAGGAGTCTGAGGTTCTTGCTAAAGCTAAGATGCCGCCTAGTGCTGCTGAAATGGAGGCCATGAAGGATAAACTGGTGAAGATGGAGTTTGACCACATCGCCGTAACGACCAGTCATGAAAAAGCAATAGCACAGTTAACGTCAGTGGTGGAGCACAGAGGAGACGTCATCCGCAAGCTGAAGGAGACTCTCCGAAAAACCCAACAGCAGGACGAGCATTCATTTATGGACGGTGAGGAGCCTCATACTAATCCTGGCACCCAGCCCAAAACTTCTACTTGTCATAAAGATAAAAAGATTGAGGAGCTGGAGAAGAAGACTGCACAATTTGAAAGCCTGGTGAGCAAGCAACAAGAAGAGATCACTAAATGGAAAAACAGAGCTTATAAGTtgagagaaagtaagaaagaagcTCCTCATTCTCCACGCACACCAACCAAGCGACCTCCACTGTTAATAGAAAACGAAGTGAACTCCCCTAAGAAAGCGTTCCTCGATTCTCCGAAAAGCAAGTTCTTTGACGTCCATGCCGGCACAGAGCCGATGTCGCTCAAGTGCCCAAAGCAGTTCTTTGATAACTCCAGCCTTGGAACCATGCCAGCTGAGCCAGCTATGGATGATTCCTCAGGAAGTGATGAGGATACTGGCCCCAACGCAGCCGtcagctctgacacacacacagaaagctgGTGGCATATTCCAAACTCGTCACCGAATAAGACCAACCTGAATCTGGATGCCAACGGCTGTCCAACAcagtgatttaattttatttgttcgtttgtgtttttttaatgtttgtctCTGTCATTCATCCACTTTTCTAGAATAAAATGACCCTATTTTAATGAactctaacttttttttttttttttaagcagcttTGTTGGAATTGTTTTAAAGCTGTTTGTTGGATACTGGTGTAT

Function

symbol description
cenpe Predicted to enable microtubule binding activity and plus-end-directed microtubule motor activity. Predicted to be involved in microtubule-based movement and mitotic cell cycle. Predicted to be active in microtubule. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 13. Orthologous to human CENPE (centromere protein E).

NR:

description
PREDICTED: centromere-associated protein E isoform X8

GO: NA

KEGG:

id description
K11498 CENPE; centromeric protein E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300227.1 True 8494 mRNA 0.47 59 6162114 6190394

Neighbor

gene id symbol gene type direction distance location
LOC113537602 tmem255b coding downstream 1152 6136507 ~ 6160962 (-)
blzf1 blzf1 coding downstream 178317 5976377 ~ 5983797 (-)
txnl4b txnl4b coding downstream 188675 5971040 ~ 5973439 (-)
mrpl16 mrpl16 coding downstream 193049 5963752 ~ 5969065 (-)
mrpl39 mrpl39 coding downstream 241915 5913959 ~ 5920199 (-)
grk1a grk1,grk1a,LOC107748333 coding upstream 1234 6191628 ~ 6200180 (-)
tfdp1b tfdp1 coding upstream 13303 6203697 ~ 6222555 (-)
tmco3 tmco3 coding upstream 35659 6226053 ~ 6238578 (-)
lamp1a NA coding upstream 89430 6279824 ~ 6292747 (-)
cul4a cul4a,LOC102780633 coding upstream 104986 6295380 ~ 6317459 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 157324 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 160501 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 162640 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 163955 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 167367 5993489 ~ 5994747 (-)
G371454 NA non-coding upstream 339003 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 373455 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 618099 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 677350 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 689476 6879870 ~ 6881780 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 128721 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 209801 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 615082 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 767102 5388904 ~ 5395012 (-)
G370658 NA other downstream 1272733 4843329 ~ 4889381 (-)
LOC113537742 LOC108258591 other upstream 168245 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 680172 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 868441 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 1166877 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1527869 7718263 ~ 7724795 (-)

Expression


Co-expression Network