mrpl16 (mrpl16)


Basic Information

Item Value
gene id mrpl16
gene name mrpl16
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5963752 ~ 5969065 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300231.1
GACGTATTTTAATGCGTCACCGGATGTAGCCTAAGAAAGATGGCTGCGACCTTGTTGAATGCATGTTGACAAAACGGCAACCGTGTACCACTCAGAAGATGATATTAATGGTTTGATAAAATAGTTTGATATTTCTAACATTATAATTGAACATGTTTTCGGTGTTTAGGCGTGTGTTTTCAGGGCTAGCGAGCAGGACGCTACAAGCGCCAGCTCTCCTGCAGCAGCAGGACTTAAAGGTGCTCTCGGCTGGGTTGAAGACGTATGATGTTCCTCCAGACTACAGTGATGTGGTTTTACCAGACAGGCCCAAACTCAAATTCCTCAATAAGGTCCCTAATTTAAAAAAGGCCAAGAAGGAGATGAAGAAGCTACGTGACATCCAGGGTCCAGCTATTTCCGCCAACACGTTCAGATGGGGACAGTATGGCATTTTGGCTATGGGTGGAGGATATCTGCACTGGGGCCACATGGAGATGATGAGGCTCACTATTAATCGGCGTATGGACTCACGTACCACCTTTGCCCGTTGGCGGATTAATGCTCCTTACAAGCCCATTACTCGTAAAGGCCTGGGTCAACGCATGGGAGGAGGCAAAGGTGCCATCGACCACTACGTTACACCAGTAAAGTGCGGCCGGTTGATAGTAGAGGTCGGAGGTCATATTGAACTTGGGGAAGTGGAATCTGTGCTTAAAGAAGTGGCAAAGAAGCTGCCCTTCCCAGCCAAGGTGGTGAGCAGAGAGAGTCTGGCTGCCATGCAGCAGGAACAAGCTGAGATGGAGGCCAACAACCAGAACCCATGGACCTTCAAGAGAATAGCCAGGTCCAATATGCTGGGCATCCGCAAAGTCCTCAGCCCGTTTGATCTCCATAATCACGGCCGCTACACCGGAAAGTTCTTCAATCCAGACAGAGTCTGAGCTCGACTGGACCATGGCAGGCTGAAAAACGGCATCATCAATACCTCTtccaaaaaaatgtgcaaaaaacaGTGTATGAACTTTATCTACACACCACATCCTGTGTTAGATTAGGATCACACTCTTCAGCAGTGAAGTTGGCAGTGGATCAGAAGAATGAGAGAATTGTAGACCAACCATCATGctacactatgtgtgtgtgggtgtgtagtatttcagaatgttttatatattaaatcatACTTACATTGAGCCtcatttataaatcttttaGTATGAAAACGTTTGCGTAAGCCAAATTGAACTAAGAGTTTCCACTAGAGTTACTAAAgtttcagaaaatgctgattTCCCTTGTACTTATGTGCGTATATTAATCTCCCATAAAGTGCAAAGCatgttcctgacacagctcattttcATTTAGTGAAAACCACAAAGGTAATTGGTTAAGCACCTAGAGGGCTggaaacagtgaaagaaaaaagcagaaaggcaTATGTCAACGTTATTTCAACTcccttctatgccaataaaagaTATTTAGCACTGTCACA

Function

symbol description
mrpl16 Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL16 (mitochondrial ribosomal protein L16).

NR:

description
39S ribosomal protein L16, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02878 RP-L16, MRPL16, rplP; large subunit ribosomal protein L16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300231.1 True 1480 mRNA 0.45 5 5963752 5969065

Neighbor

gene id symbol gene type direction distance location
mrpl39 mrpl39 coding downstream 43553 5913959 ~ 5920199 (-)
jam2a jam2 coding downstream 54885 5896336 ~ 5908867 (-)
n6amt1 n6amt1,LOC107563652 coding downstream 367657 5589772 ~ 5596095 (-)
wu:fa56d06 LOC108258903 coding downstream 406662 5549553 ~ 5557090 (-)
urp2 LOC108258299 coding downstream 550979 5409611 ~ 5412773 (-)
txnl4b txnl4b coding upstream 1975 5971040 ~ 5973439 (-)
blzf1 blzf1 coding upstream 7312 5976377 ~ 5983797 (-)
LOC113537602 tmem255b coding upstream 167442 6136507 ~ 6160962 (-)
cenpe cenpe,LOC107751066,LOC107573438 coding upstream 193049 6162114 ~ 6190394 (-)
grk1a grk1,grk1a,LOC107748333 coding upstream 222563 6191628 ~ 6200180 (-)
G371121 NA non-coding downstream 68064 5892326 ~ 5895688 (-)
LOC117596178 NA non-coding downstream 71955 5886846 ~ 5891797 (-)
G371117 NA non-coding downstream 78140 5880476 ~ 5885612 (-)
LOC117596170 NA non-coding downstream 445372 5510716 ~ 5518380 (-)
G370942 NA non-coding downstream 455383 5508102 ~ 5508369 (-)
G371147 ercc5 non-coding upstream 24424 5993489 ~ 5994747 (-)
G371152 NA non-coding upstream 28938 5998003 ~ 5998159 (-)
G371153 NA non-coding upstream 29783 5998848 ~ 5999474 (-)
G371135 NA non-coding upstream 32114 6001179 ~ 6001613 (-)
G371134 mettl21c,LOC108429839 non-coding upstream 32773 6001838 ~ 6004790 (-)
LOC113537623 NA other downstream 11439 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 416720 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 568740 5388904 ~ 5395012 (-)
G370658 NA other downstream 1074371 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 3110541 2843212 ~ 2853211 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 46661 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 389574 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 901501 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 1089770 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 1388206 7357271 ~ 7478509 (-)

Expression


Co-expression Network