cul4a (cul4a,LOC102780633)


Basic Information

Item Value
gene id cul4a
gene name cul4a,LOC102780633
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6295380 ~ 6317459 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300258.1
ATGAGGAATCTTTTGTGCAGACTTGGCAACCCTGCCTGATATACGGGCCATTTTGTTGTGGTGTTTGGGGGGGAAAATTAGCCGTTAACTATGAACATTGTGCACTTTTGCCTCGACACTGTGTGCTCTTTGGGTCAGATATTAAGCCAGAACGCTACATAAGGGTTGGCCGTTTGCGACAGGCGactgtttgtaattatttacactgtttacaggTTTGTTTTGACGCAGTTAGCTAGCTGCCGTGCTAactcagctagctggctaacttcAGCTGTAGTTCCTCTCGGCTTCAGCTCTTGTCATTAAGGGCTTCGAGCGCTGAAAGTTAGAAACACGCTGGAGTGTTTGCAGGGCGGGTCGCTGAAGGGCTGAAGAAGGCGTTCATTTCAGGGGGAAAACACAACAGCGACGGCTCGCTTTAGCcagcaaaagaacaaaaagttgGCTGTGAATGATGGCAGAGGAGTCCGGACAGAGCAAGAGCGCCGGTTTCTCGGCTCTGGTTGAGAACAGTAACGGAGTGACTAAAACCCCGAGCTCCAAATCCAGCACGTCCAAGAAACTGGTGATTAAAAACTTCAAAGaAAGACCCACGCTGACGGAAACCTACACCGAGGACACATGGCTGAAGTTGCGTGATGCCGTTGGTGCTATCCAGAACAGCACATCAATCAAATACAACTTGGAGGAGCTTTATCAGgctGTGGAAAATCTTTGCTCTTACAAGGTCTCGCCCATGTTATACAAACAACTCCGGCAAGTGTGTGAAGATCACGTGCGGGCTCAGATCCACCAGTTTAGAGAAGACTCTCTGGACAGTCTGTCTTTTTTGAAGAGGATGAACAGATGCTGGCAAGACCACTGCAGAcaaacaaTCATGATCCGTAGCATTTTCCTCTTTCTGGATCGCACATACGTCCTCCAGAACTCCCTTCTTCCCTCTATATGGGACACAGGGCTGGAGCTGTTTCGCACGCACATTGTGAGTGATGGTGCAGTCCAGAGTCGTACAGTAGAGGGAATCTTGGAGCAAATTGAACGAGAGAGGAATGGTGAGACTGTGGATCGGAGTCTCCTGCGCAGCTTACTAGGCATGCTCTCAGACCTACAGGTGTATAAGGAGTCTTTCGAAAACAGGTTTCTGATTGAGACGGATCGCTTGTATGCAGCTGAGGGTCAGAGACTGATGTTAGACAGAGATGTACCTGAATACCTGCACCATGTAGCACGGCGTCTAGAGGAGGAGAACGATCGTGTCATCAGTTACCTAGATCAGAGCACTCAGAAGCCCCTGATCTCTGCAGTAGAAAAGCAGCTTCTGGGTGAACATATGACTGCCATTTTACAGAAGGGTCTCAGTACACTGTTGGATGAGAACCGTGTTACTGAGCTGACTCTGCTCTACCAGCTCTTCAGCAAAGTGAAGGGAGGTCTGCCTGTATTACTGCAGTTCTGGAGAGAGTACATCAAGAACTTTGGTGGCGAGATTGTTGGCTCTCCTGAAAAAGACAAGGACATGGTGCAGGAACTGCTAGACTTTAAGGATAAAATGGACAACGTAGCGCACAGCTGCTTCCAGAGGAACGAGGGCTTCATCAATGCCATGAAGGAGGCCTTCGAGAGCTTCATTAACAAGAGACCCAACAAACCAGCAGAGCTTATTGCCAAATATGTAGACTCCAAACTACGCGCTGGTAACAAAGAGGCCACAGAAGAGGAGCTGGAGAGAATCCTTGACAAGATCATGATTATCTTCCGCTTTATCCACGGTAAAGACGTGTTTGAAGCGTTCTACAAAAAAGATCTAGCGAAGCGCTTGCTGGTGGGTAAAAGTGCCTCTGTGGATGCCGAGAAATCCATGCTGTCCAAACTCAAGCATGAGTGTGGTGCAGCATTCACCAGCAAGCTCGAGGGCATGTTCAAAGATATGGAACTTTCCAAAGACATTATGATCCAATTCAAACAGTACATGCAGAATCAGAGTGAACCCAGCAACATCGATCTGACAGTCAACATCCTCACCATGGGCTACTGGCCCACCTACACTCCCATGGATGTCCATCTGCCCTCTGAGATGGTAAAACTTCAGGAGGTGTTCAAAACGTTCTATCTCGGGAAGCACAGTGGGCGAAAGCTTCAGTGGCAGCCCACACTGGGCCATGCGGTGCTTAAAGCTGAGTTTAAGGAGGGTAAAAAGGAGCTGCAGGTATCTTTATTCCAGACACTTGTTCTGCTCATGTTTAATGAAGGGGAGGAGTTTACGCTAGAGGAGATACAAACAGCTACAGGAATAGAGGAGAGTGAGCTGAGACGCACACTGCAGTCCCTGGCGTGTGGGAAAGCTCGAGTACTTAATAAAAATCCCAGAGGGAAAGACGTGGAGGACGGAGACCGCTTCAACTTCAATAATGACTTCAAACATAAACTGTTCCGTATTAAAATCAACCAGATTCAGATGAAGGAGACGGTAGAGGAGCAGGTGAGCACCACAGAGCGGGTCTTCCAGGACAGGCAGTACCAGATAGATGCCGCAGTGGTGAGGATCATGAAGATGAGGAAGACTCTCAGCCACAACCTGCTGGTGTCAGAACTCTACAACCAGCTCAAGTTCCCTGTGAAGCCAGGTGACCTGAAGAAGCGCATCGAGTCCCTCATTGACCGAGACTACATggagagagacaaggagagcCCCAACCAGTATCATTATGTTGCCTGAGATCCAGTCCGGAGGCACAGGCACAGCCACTGATCTGAGATCTGCCCTTTACTCGGGCTGCATGCCCTAGGACAGCCTGTACCCCACCACCTTCGAGGACCCCGATTATGCCCGCCAGTAGAGTGACCAGGGTTGGCATGGGGCCTTACTGTACTTTAAAGTGGTGGGGTTAAAGTGTGACGTTAGGAGGATCGCACGAGGAGAATGATCAGCTGATGATTTCCACAAACAAgcactttgttttcttcttgcttttgttttttttgttgtttttttagttttgctttttGTGGTCAGTCTTCTCTTTTGATGTCTCTCACATGCGCTCATAGTTTAGTTCAATTTTTTTAGCTGTTCTGGCTGCTGACTTGTCAGATTTTGCTAGAGAATGGAGAGTGTGTTCAGTTATGAATAGCAGCAGGCTGTGTTAGCATCAGGGTTTTTGAGAAATTTCACTCAGGCTATGAAATGTTGATAAACCAAGCATTTTACTTGCAAAAGCTTcactaacacacagacacatacagcaAGATTGGATTCTATGACATGTTCTCTAGGTTTCACACACTGAAAAAGGctaaaatgagtgaaaaaatgttttttaagaCTCAACAAAGCAcattagtgtgtatgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtggatATCTGtgtgctagattttttttttcttctaattcaCCACTAAAAATATTCTGACCAACA

Function

symbol description
cul4a Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Acts upstream of or within embryonic pectoral fin morphogenesis; heart development; and otic vesicle morphogenesis. Predicted to be part of Cul4A-RING E3 ubiquitin ligase complex. Is expressed in brain; heart; and pectoral fin. Orthologous to human CUL4A (cullin 4A).

NR:

description
PREDICTED: cullin-4A isoform X1

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K10609 CUL4; cullin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300258.1 True 3467 mRNA 0.47 20 6295380 6317459

Neighbor

gene id symbol gene type direction distance location
lamp1a NA coding downstream 2633 6279824 ~ 6292747 (-)
tmco3 tmco3 coding downstream 56802 6226053 ~ 6238578 (-)
tfdp1b tfdp1 coding downstream 72825 6203697 ~ 6222555 (-)
grk1a grk1,grk1a,LOC107748333 coding downstream 95200 6191628 ~ 6200180 (-)
cenpe cenpe,LOC107751066,LOC107573438 coding downstream 104986 6162114 ~ 6190394 (-)
LOC117596162 LOC108258591 coding upstream 9318 6326777 ~ 6330275 (-)
LOC113537543 LOC108258588 coding upstream 46353 6363812 ~ 6380175 (-)
f7i fa7 coding upstream 54916 6372375 ~ 6378994 (-)
f7 LOC108258589,LOC108429788 coding upstream 62870 6380329 ~ 6384799 (-)
f7l LOC108258590 coding upstream 67440 6384899 ~ 6392466 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 290590 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 293767 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 295906 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 297221 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 300633 5993489 ~ 5994747 (-)
G371454 NA non-coding upstream 211938 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 246390 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 491034 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 550285 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 562411 6879870 ~ 6881780 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 261987 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 343067 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 748348 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 900368 5388904 ~ 5395012 (-)
G370658 NA other downstream 1405999 4843329 ~ 4889381 (-)
LOC113537742 LOC108258591 other upstream 41180 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 553107 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 741376 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 1039812 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1400804 7718263 ~ 7724795 (-)

Expression


Co-expression Network