LOC113535651


Basic Information

Item Value
gene id LOC113535651
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2261289 ~ 2271653 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300269.1
CTGTGTGTCCGTATAAGTTGGCAATGCATAGAGGAACATCTAATGTTTTAGGAAGGGTGAGAATGGAAAAGTCAGCCAAGTGAGAAGAAGACCAAAAGCACACTTTACCAcaaactcacaacacacaccctgCGTGGAGTACATGACATACATGAGATATGGTTCGTCTCATGTCAGTGACCCTACTCTTCTCAGTATGTGGTATAGAGGCAAATATTCCTCATCGATATCACTTTGTGAATGAGAATAAAACCTGGAGTGAAGCTCAGACTTATTGCAGAGAGAAATACACTGATCTCGCCACCATCAACAACATGGAAGAGATGAAGAAGCTGAATCACACACTGAAGAAGGAAACTGCAGAGCAAGCTTGGATCGGTCTACAGAGAGAGGGCACTGGGGAATGGCAGTGGTCTCTGGCAGACCAAACTTTCTACAGAGACGGAGACACTTACAGAAACTGGAATAGTGGAGAACCAAACAATTGCAAGAAAAATGAGTTCTGTGTTTTCATGTCAGAAAGCAATGGTTTCTGGTTTGATGATCCGTGTAATAGAGCATTACCTTTTGTGTGTTATGAAGaaaagaacacaaacactaaTAGACACATATTAATTAATGAGGGAAAGAGCTGGTATGATGCTCAGACCTACTGCAGAGAGAAATACACTGATCTGGTCAGTGTGAGGAACCAAACTGAGAATGAGGAGATCTGGAGAGTGAGTCAAAATTCACCTAATGAAACTGTTTGGATTGGTCTGTTTAATGACGCCTGGAAGTGGTCAGATCAGAGTAATTCCTCATTCAGATACTGGAGCTCTGACAAACCCAGTGGAGGTTTGAACTGTGctgcagtgtctgtgtctgaGCAACACTACTGGAGTGATGTGGACTGCACAAAAACACTCCCATTCATCTGTCATGAGAataaactgatCCTGATTAAGGAGAATCTGACCTGGTGGGAAGCTCTGAATTACTGCAGGAACCATCATTACGACCTGGTCTCAGTGCGCACTGAGGAGATGCAGCTCTGGGTGAAGGAGGTGGTTCAGAACGCCTCCACTGAACACGTGTGGCTCGGCCTGCGTCACGACTGTGCCCAGCGTATCTGGTTCTGGGTTTTTGGATCAATGCTCTGCTATCAGGACTGGGCCCTGGGGTATGGGACCTGGAATGAAGACTGCAGCCATGAGAAGAGAAGCGGAGCAGTGCAGTCTGGAGTAGAGCAGCAGTGGATCGACCTGCCTGAGAGCTACAAACTCAACTTCATCTGCTCTACCTATGACGacatttttttgaTTAAACATGAAGACTGAAGACAAGCTGTGGTCCACCATCTGTATCCAGCATCAGCAGATCTACAGTACTGTCGTATTTATACTCTTCTATACATTATTGCTATAACGTATCCTCTTTATCCAGATGActcatcatatttttaatatggtATTCAGTGAATTCCACTGTCTCCATACAGCATGACCTTTTCATATTCCCAGTGTATGTTACATATATTATACTTGCTTTTCTTATTAAGAGAGGCTTTATGGGCAATTAAGGTGAAATCTATTTACTTGATTTTTATACTACAGTGTGTTTGGTATGCACATTGAATTGTTTTTCATATGCTTtctcagaatagggaaaaatatCATACTGAGCTACTTTACACCAGTGCAGGAAGTTTAAACAAATAGCCCTGCAAACaatgataaaatgttcattattcatAACAGTTATACAGGTGTCATGtgatacatttttattgttttgttgtttttttttctgttctcacACGTATGCCTTTTTACATGTGGATAAATAAGTTTGTTATTAAGATGTCCTTGCTTCTTAATGTGTAAGAATGTAGACTGTAATGACTGTT
>XM_034300270.1
GTATAAGTTGGCAATGCATAGAGGAACATCTAATGTTTTAGGAAGGGTGAGAATGGAAAAGTCAGCCAAGTGCAAAAGGTGAGAAGAAGACCAAAAGCACACTTTACCAcaaactcacaacacacaccctgCGTGGAGTACATGACATACATGAGATATGGTTCGTCTCATGTCAGTGACCCTACTCTTCTCAGTATGTGGTATAGAGGCAAATATTCCTCATCGATATCACTTTGTGAATGAGAATAAAACCTGGAGTGAAGCTCAGACTTATTGCAGAGAGAAATACACTGATCTCGCCACCATCAACAACATGGAAGAGATGAAGAAGCTGAATCACACACTGAAGAAGGAAACTGCAGAGCAAGCTTGGATCGGTCTACAGAGAGAGGGCACTGGGGAATGGCAGTGGTCTCTGGCAGACCAAACTTTCTACAGAGACGGAGACACTTACAGAAACTGGAATAGTGGAGAACCAAACAATTGCAAGAAAAATGAGTTCTGTGTTTTCATGTCAGAAAGCAATGGTTTCTGGTTTGATGATCCGTGTAATAGAGCATTACCTTTTGTGTGTTATGAAGaaaagaacacaaacactaaTAGACACATATTAATTAATGAGGGAAAGAGCTGGTATGATGCTCAGACCTACTGCAGAGAGAAATACACTGATCTGGTCAGTGTGAGGAACCAAACTGAGAATGAGGAGATCTGGAGAGTGAGTCAAAATTCACCTAATGAAACTGTTTGGATTGGTCTGTTTAATGACGCCTGGAAGTGGTCAGATCAGAGTAATTCCTCATTCAGATACTGGAGCTCTGACAAACCCAGTGGAGGTTTGAACTGTGctgcagtgtctgtgtctgaGCAACACTACTGGAGTGATGTGGACTGCACAAAAACACTCCCATTCATCTGTCATGAGAataaactgatCCTGATTAAGGAGAATCTGACCTGGTGGGAAGCTCTGAATTACTGCAGGAACCATCATTACGACCTGGTCTCAGTGCGCACTGAGGAGATGCAGCTCTGGGTGAAGGAGGTGGTTCAGAACGCCTCCACTGAACACGTGTGGCTCGGCCTGCGTCACGACTGTGCCCAGCGTATCTGGTTCTGGGTTTTTGGATCAATGCTCTGCTATCAGGACTGGGCCCTGGGGTATGGGACCTGGAATGAAGACTGCAGCCATGAGAAGAGAAGCGGAGCAGTGCAGTCTGGAGTAGAGCAGCAGTGGATCGACCTGCCTGAGAGCTACAAACTCAACTTCATCTGCTCTACCTATGACGacatttttttgaTTAAACATGAAGACTGAAGACAAGCTGTGGTCCACCATCTGTATCCAGCATCAGCAGATCTACAGTACTGTCGTATTTATACTCTTCTATACATTATTGCTATAACGTATCCTCTTTATCCAGATGActcatcatatttttaatatggtATTCAGTGAATTCCACTGTCTCCATACAGCATGACCTTTTCATATTCCCAGTGTATGTTACATATATTATACTTGCTTTTCTTATTAAGAGAGGCTTTATGGGCAATTAAGGTGAAATCTATTTACTTGATTTTTATACTACAGTGTGTTTGGTATGCACATTGAATTGTTTTTCATATGCTTtctcagaatagggaaaaatatCATACTGAGCTACTTTACACCAGTGCAGGAAGTTTAAACAAATAGCCCTGCAAACaatgataaaatgttcattattcatAACAGTTATACAGGTGTCATGtgatacatttttattgttttgttgtttttttttctgttctcacACGTATGCCTTTTTACATGTGGATAAATAAGTTTGTTATTAAGATGTCCTTGCTTCTTAATGTGTAAGAATGTAGACTGTAATGACTGTT
>XM_034300271.1
AGTAGTTGAAATTTCCTGTTCATCAGAACTGGCAGTTCTGACACTGAAGGCAAAGAGATGGGAGGGGTTGAAAGAGGACAGTGATACAGTATAATAAGAGGTGTGTTATGTTCAGGTGCAAAAGGTGAGAAGAAGACCAAAAGCACACTTTACCAcaaactcacaacacacaccctgCGTGGAGTACATGACATACATGAGATATGGTTCGTCTCATGTCAGTGACCCTACTCTTCTCAGTATGTGGTATAGAGGCAAATATTCCTCATCGATATCACTTTGTGAATGAGAATAAAACCTGGAGTGAAGCTCAGACTTATTGCAGAGAGAAATACACTGATCTCGCCACCATCAACAACATGGAAGAGATGAAGAAGCTGAATCACACACTGAAGAAGGAAACTGCAGAGCAAGCTTGGATCGGTCTACAGAGAGAGGGCACTGGGGAATGGCAGTGGTCTCTGGCAGACCAAACTTTCTACAGAGACGGAGACACTTACAGAAACTGGAATAGTGGAGAACCAAACAATTGCAAGAAAAATGAGTTCTGTGTTTTCATGTCAGAAAGCAATGGTTTCTGGTTTGATGATCCGTGTAATAGAGCATTACCTTTTGTGTGTTATGAAGaaaagaacacaaacactaaTAGACACATATTAATTAATGAGGGAAAGAGCTGGTATGATGCTCAGACCTACTGCAGAGAGAAATACACTGATCTGGTCAGTGTGAGGAACCAAACTGAGAATGAGGAGATCTGGAGAGTGAGTCAAAATTCACCTAATGAAACTGTTTGGATTGGTCTGTTTAATGACGCCTGGAAGTGGTCAGATCAGAGTAATTCCTCATTCAGATACTGGAGCTCTGACAAACCCAGTGGAGGTTTGAACTGTGctgcagtgtctgtgtctgaGCAACACTACTGGAGTGATGTGGACTGCACAAAAACACTCCCATTCATCTGTCATGAGAataaactgatCCTGATTAAGGAGAATCTGACCTGGTGGGAAGCTCTGAATTACTGCAGGAACCATCATTACGACCTGGTCTCAGTGCGCACTGAGGAGATGCAGCTCTGGGTGAAGGAGGTGGTTCAGAACGCCTCCACTGAACACGTGTGGCTCGGCCTGCGTCACGACTGTGCCCAGCGTATCTGGTTCTGGGTTTTTGGATCAATGCTCTGCTATCAGGACTGGGCCCTGGGGTATGGGACCTGGAATGAAGACTGCAGCCATGAGAAGAGAAGCGGAGCAGTGCAGTCTGGAGTAGAGCAGCAGTGGATCGACCTGCCTGAGAGCTACAAACTCAACTTCATCTGCTCTACCTATGACGacatttttttgaTTAAACATGAAGACTGAAGACAAGCTGTGGTCCACCATCTGTATCCAGCATCAGCAGATCTACAGTACTGTCGTATTTATACTCTTCTATACATTATTGCTATAACGTATCCTCTTTATCCAGATGActcatcatatttttaatatggtATTCAGTGAATTCCACTGTCTCCATACAGCATGACCTTTTCATATTCCCAGTGTATGTTACATATATTATACTTGCTTTTCTTATTAAGAGAGGCTTTATGGGCAATTAAGGTGAAATCTATTTACTTGATTTTTATACTACAGTGTGTTTGGTATGCACATTGAATTGTTTTTCATATGCTTtctcagaatagggaaaaatatCATACTGAGCTACTTTACACCAGTGCAGGAAGTTTAAACAAATAGCCCTGCAAACaatgataaaatgttcattattcatAACAGTTATACAGGTGTCATGtgatacatttttattgttttgttgtttttttttctgttctcacACGTATGCCTTTTTACATGTGGATAAATAAGTTTGTTATTAAGATGTCCTTGCTTCTTAATGTGTAAGAATGTAGACTGTAATGACTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300269.1 False 1888 mRNA 0.41 7 2261289 2271653
XM_034300270.1 False 1887 mRNA 0.41 7 2261289 2271643
XM_034300271.1 True 1933 mRNA 0.41 6 2261289 2266153

Neighbor

gene id symbol gene type direction distance location
LOC117596168 NA coding downstream 2141 2256421 ~ 2259148 (-)
klf7a LOC108258322 coding downstream 324214 1915663 ~ 1937075 (-)
LOC113535707 LOC108258365,LOC108437114 coding downstream 351915 1895048 ~ 1909374 (-)
pard3ba pard3b coding downstream 522354 1618820 ~ 1738935 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding downstream 742918 1512321 ~ 1518371 (-)
LOC113535598 LOC108258873 coding upstream 11138 2282791 ~ 2331670 (-)
LOC113535761 NA coding upstream 75575 2347228 ~ 2350989 (-)
LOC113535442 LOC108258868,LOC108258869 coding upstream 229377 2501030 ~ 2515018 (-)
LOC113535562 LOC108258657 coding upstream 251462 2523115 ~ 2542866 (-)
LOC113535812 mx1 coding upstream 303797 2575450 ~ 2583050 (-)
LOC117596129 NA non-coding downstream 16131 2199025 ~ 2245158 (-)
LOC117596130 NA non-coding downstream 73347 2186646 ~ 2187942 (-)
LOC117596194 NA non-coding downstream 116838 2115578 ~ 2144451 (-)
G369663 NA non-coding downstream 239974 2018715 ~ 2021315 (-)
G369641 NA non-coding downstream 371915 1888504 ~ 1889374 (-)
LOC113535806 NA non-coding upstream 71460 2343113 ~ 2345533 (-)
G369891 NA non-coding upstream 239103 2510756 ~ 2510962 (-)
G369907 NA non-coding upstream 248845 2520498 ~ 2522127 (-)
G369924 LOC107702554 non-coding upstream 284326 2555979 ~ 2558809 (-)
G369926 NA non-coding upstream 287560 2559213 ~ 2560060 (-)
mdh1b mdh1b other downstream 428560 1824204 ~ 1832729 (-)
G369586 NA other downstream 466065 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 649623 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 984476 1276021 ~ 1276813 (-)
G369125 actb other downstream 1345606 911553 ~ 915683 (-)
LOC113535702 mx1 other upstream 295104 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 571559 2843212 ~ 2853211 (-)
G370658 NA other upstream 2571676 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 3117251 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 3258339 5529992 ~ 5547032 (-)

Expression


Co-expression Network