LOC117596168


Basic Information

Item Value
gene id LOC117596168
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2256421 ~ 2259148 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300285.1
GTTATGTTCAGGTGCAAAAGGTGAGAAGAAGACCAAAAGCACGCATTACCAcaaactcacaacacacaccctgCGTGGAGTACATGACATACATGAGATATGGTTCGTCTCATGTCAGTGACCCTACTCTTCTCAGTATGTGGTATAGGATCACATATTCCTCATCGCTATCATTTGGTGAATGAGAATAAAACCTGGAGTGAAGCTCAGACTTATTGCAGACAGAAATACACTGATCTCGCCACCATCAACAACATGGAAGAGATGAAGAAGCTGAATCACACACTGAAGACGGAAACTGCAAAGCAAGCTTGGATCGGTCTACAGAGAGAGGGCACTGGGGAATGGCAGTGGTCTCTGGCAGACCAAACTTTCTACAGAGACGGAGACACTTACAGAAACTGGAGGAGTGGAGAACCAAACAATTGCAAGAAAAATGAGTTCTGTGTTGAACTCATTACAAACAATGGCTCGTGGAATGATGAGCAGTGCAATGAGAAAAGACCTTTTGTGTGTTATGAAGaaaatgacacaaacacTAATAGATACAAATTGATTAATGAGACAAAGACCTGGTATGATGCTCAGACCTACTGCAGAGAGAAATACACCGATCTGGTCAGTGTGAGGAACCAAACTGAGAATGAGGAGATCTGGAGAGTGAGTCAAAATTCAACTAATGAAGATGTTTGGATTGGTCTGTTTAATAACTCCTGGAAGTGGTCAGATCAGAGTAATTCCTCATTCAGATACTGGAGCTCTAACAAACCCAGTGGACATTTGAACTGTActgcagtgtctgtgtctgaGCAACACTACTGGAGTGATATGAACTGCACAGAAAAGCTCCCATTCATCTGCCATGAGAATAAGCTAATCCTGATTAAGGAGAATCTGACCTGGAAAGAAGCTCTGAGATACTGCAGGAACCATCATTACGACCTGGTCTCAGTGCGCACTGAGGAGATGCAGCTCTGGGTGAAGGAGGTGGTTCAAAACGCCTCCACTGAACACGTGTGGCTCGGCCTGCGTCACGACTGTGCCCAGCGTATCTGGTTCTGGGTTTTTGGATCAATGCTCTGCTATCAGGACTGGGCCCTGGGGTATGGGACCTGGAATGAAGACTGTAGCCATGTGAAGAGAAGCGGAGCAGTGCAGTCTGGAGGAGAGCAGCAGTGGATCGACCTGCCTGAGAGCTACAAACTCAACTTCATCTGCTCTACCTATGACGatatgttttattaaacatgaagaCTGAAGACAAGCTGTGGTCCATTATCTGTATCCAGCATCAGCAGATCTACAGTACTGTCTCTTTTATATTCCTTATACATTTTTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300285.1 True 1341 mRNA 0.45 6 2256421 2259148

Neighbor

gene id symbol gene type direction distance location
klf7a LOC108258322 coding downstream 319346 1915663 ~ 1937075 (-)
LOC113535707 LOC108258365,LOC108437114 coding downstream 347047 1895048 ~ 1909374 (-)
pard3ba pard3b coding downstream 517486 1618820 ~ 1738935 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding downstream 738050 1512321 ~ 1518371 (-)
LOC113535431 LOC108258373 coding downstream 890515 1355723 ~ 1365906 (-)
LOC113535651 NA coding upstream 2141 2261289 ~ 2271653 (-)
LOC113535598 LOC108258873 coding upstream 23643 2282791 ~ 2331670 (-)
LOC113535761 NA coding upstream 88080 2347228 ~ 2350989 (-)
LOC113535442 LOC108258868,LOC108258869 coding upstream 241882 2501030 ~ 2515018 (-)
LOC113535562 LOC108258657 coding upstream 263967 2523115 ~ 2542866 (-)
LOC117596129 NA non-coding downstream 11263 2199025 ~ 2245158 (-)
LOC117596130 NA non-coding downstream 68479 2186646 ~ 2187942 (-)
LOC117596194 NA non-coding downstream 111970 2115578 ~ 2144451 (-)
G369663 NA non-coding downstream 235106 2018715 ~ 2021315 (-)
G369641 NA non-coding downstream 367047 1888504 ~ 1889374 (-)
LOC113535806 NA non-coding upstream 83965 2343113 ~ 2345533 (-)
G369891 NA non-coding upstream 251608 2510756 ~ 2510962 (-)
G369907 NA non-coding upstream 261350 2520498 ~ 2522127 (-)
G369924 LOC107702554 non-coding upstream 296831 2555979 ~ 2558809 (-)
G369926 NA non-coding upstream 300065 2559213 ~ 2560060 (-)
mdh1b mdh1b other downstream 423692 1824204 ~ 1832729 (-)
G369586 NA other downstream 461197 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 644755 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 979608 1276021 ~ 1276813 (-)
G369125 actb other downstream 1340738 911553 ~ 915683 (-)
LOC113535702 mx1 other upstream 307609 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 584064 2843212 ~ 2853211 (-)
G370658 NA other upstream 2584181 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 3129756 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 3270844 5529992 ~ 5547032 (-)

Expression


Co-expression Network