LOC117596169 (igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393,LOC107749880)


Basic Information

Item Value
gene id LOC117596169
gene name igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393,LOC107749880
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11941152 ~ 11943095 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300296.1
tCAAGTGATTTACACAGGGAGAGAAGTTGATGCCGGGGGTCCTACCGACCGGAACCGAGTCTTCATTACTGATCATTTTATCAGTTCATTTCCTTCTGGGGATTTGTTCTGTCGCACCTCCACAGCCTTAAATcgcgtgtttgtgtttgtgtgagtgtgtgtgagtgagtgtgtgagagagtgagtgagtgtgagtgagtgtgtgagagtgagtgtgtgtgtatgtgagagtgtgactgagtgtgtgagtgtgtgtgcggcgcgtgtttttctttctttctttccttttttttgttgctgttgttgttgttgctgctgctgttaatTTCCGCTCGGTGTTTGGATCATGAATAAACTGTACGTGGGGAACCTGAGTCCCTCGGTCACAGTGGAAGACCTGAAGCGGCTGTTCGGCGAGCGCCAGCTGCCCGTCAGCGACCGGACCGTCTTACTCAAGTCCGGTTACGCTTTCGTTGATTTCCCTGACCAGAAGTGGGCCATAAAAGCCATTGAAACGCTGTCAGgGAAAGCCGAGTTGCACGGAAAGGTGATCGAGGTTGATTATTCCGTTCCCAAAAAACTAAGGTAAATCCATTTCTTTAAGATTTCTCGATCATTGCT

Function

symbol description
igf2bp2a Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in nervous system development; regulation of RNA metabolic process; and regulation of gene expression. Predicted to act upstream of or within mRNA transport. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human IGF2BP2 (insulin like growth factor 2 mRNA binding protein 2).
igf2bp2 Enables mRNA 3'-UTR binding activity and mRNA 5'-UTR binding activity. Predicted to be involved in negative regulation of translation; nervous system development; and regulation of RNA metabolic process. Located in cytoskeleton; cytosol; and nucleus. Implicated in type 2 diabetes mellitus.

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300296.1 True 621 mRNA 0.48 2 11941152 11943095

Neighbor

gene id symbol gene type direction distance location
igf2bp2b igf2bp2,LOC108435967,LOC107699092,LOC107704342,LOC107596519 coding downstream 4025 11891674 ~ 11937127 (-)
vps8 vps8,LOC107699090,LOC107719737 coding downstream 74828 11769846 ~ 11866324 (-)
march4l march4,LOC108258493,LOC106596293,LOC107567720,LOC107663921,LOC107722703,LOC107558390 coding downstream 250632 11666909 ~ 11690520 (-)
alg11 alg11,LOC107556718,LOC107705036,LOC107588826 coding downstream 388430 11546974 ~ 11552722 (-)
spp2 spp2 coding downstream 397455 11539380 ~ 11543697 (-)
LOC113537469 LOC108258698,LOC108435966 coding upstream 2739 11945834 ~ 11953213 (-)
ubac2 ubac2 coding upstream 13641 11956736 ~ 11984895 (-)
dachc LOC108259061,LOC108435962,LOC107732708,LOC107602747 coding upstream 53916 11997011 ~ 12061385 (-)
dis3 dis3,LOC107699072 coding upstream 150227 12093322 ~ 12107492 (-)
dlx2b LOC108258656 coding upstream 190380 12133475 ~ 12164139 (-)
G374495 c26h3orf70 non-coding downstream 186037 11752574 ~ 11755115 (-)
G374442 NA non-coding downstream 271896 11668993 ~ 11669256 (-)
G374371 NA non-coding downstream 344913 11595192 ~ 11596239 (-)
G374370 NA non-coding downstream 346171 11593966 ~ 11594981 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 580731 11358843 ~ 11360421 (-)
G374680 NA non-coding upstream 20709 11963804 ~ 11964781 (-)
G374727 NA non-coding upstream 149417 12092512 ~ 12092736 (-)
G374885 NA non-coding upstream 215613 12158708 ~ 12158915 (-)
G374935 NA non-coding upstream 379869 12322964 ~ 12323575 (-)
G374961 LOC108258298,LOC108258985,LOC108258304 non-coding upstream 493677 12436772 ~ 12437220 (-)
lipt1 lipt1 other downstream 1068596 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 1505785 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 2022373 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 3330311 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 3508714 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 135796 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 681956 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1364618 13307713 ~ 13320530 (-)
G375428 NA other upstream 1496124 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2029241 13972336 ~ 13980251 (-)

Expression


Co-expression Network