xpo1a (xpo1,LOC108258411,LOC107746076,LOC107729732,LOC107703835,LOC100380723,LOC106585804)


Basic Information

Item Value
gene id xpo1a
gene name xpo1,LOC108258411,LOC107746076,LOC107729732,LOC107703835,LOC100380723,LOC106585804
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14854881 ~ 14878584 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300307.1
ATGCCAGCAGATATGACAATGTTAGCGGACCATACAGCCCGGCAGCTGCTGGACTTCTCTCAGAAGCTGGACATCAACCTGCTCGACAACGTGGTCAACTCCATGTACTACGATGTCGGCTCTCAGCAACGGCTGGCACAGGAAGTCCTGACTAACTTGAAGGATCACCCGGATGCATGGACCAGAGTGGACACCATCTTGGAGTTCTCTCAGAACATGAAGACCAAATACTACGCCCTTCAGATTCTGGAAACTGTCATTAAAACACGCTGGAAAATTCTCCCGAGAAACCAGTGTGAAGgAATTAAGAAATACGTCGTGGGGCTGATTATCAAGACGTCCTCAGATCCTTCTGTGGTCGAGAAAGAGGGAGTTTATCTGGCAAAGCTGAATATGATCTTGGTGCAGATCCTGAAGCAGGAGTGGCCGAAGCACTGGCCCACGTTCATCAGCGACATTGTGGGAGCGAGTCGCACGAGCGAGAGCCTCTGCCAGAACAACATGATCATCCTGAAGCTGCTCAGCGAGGAGGTGTTCGACTTCTCCAGTGGACAGATGACTCAGGTCAAAGCCAAGCACCTGAAAGACAGTATGTGCAACGAGTTCTCCCAGATTTTTCAGCTCTGCCAGTTTGTCATGGAAAATTCCCAGAATGCTCCACTGGTCCATGCCACATTGGAGACCCTCCTGCGCTTCCTGAACTGGATTCCACTGGGCTACATTTTTGAGACCAAACTCATCAGCACCCTGGTTTACAAGtttctgaaCGTTCCGATGTTTCGAAACGTGACTCTGAAGTGTCTGACGGAAATCGCCGGCGTCAGCGTCAATCAGTACGAGGAGCAGTTCGTCAGCCTCTTCACTCTAACCATGATGCAGCTcaaacagATGCTGCCTTTGAACATGAACATCCGTATGGCGTACTCGAACGGGAAAGATGACGAGCAGAACTTCATCCAGAACCTCAGCTTGTTCCTGTGCACCTTCCTCAAAGAGCACGGGCAGCTGATTGAGAAGAGGCCCAACCTCCGGGAAACGCTCAtggagGCTCTCCACTACATGCTGCTTGTCTCTGAGGTGGAGGAGACGGAGATCTTTAAGATCTGTCTGGAGTACTGGAACCACCTGGCAGCCGAGCTGTACAGAGAGAGTCCGTTCAGCACTTCCACCTCACCGCTGCTCTCCGGCAGCCAGCATTTTGACGTGCCTCCACGCAGACACCTCTACCTGCCCGTACTCTCCAAGGTGCGTCTCCTGATGGTGAGCCGCATGGCTAAACCGGAGGAGGTGCTGGTGGTGGAGAACGATCAGGGTGAAGTGGTGAGGGAGTTCATGAAGGACACCGACTCGATCAACCTCTACAAGAACATGAGAGAGACTCTCGTGTACCTGACCCATTTGGACTATGCGGATACGGAGAGGATCATGACGGAGAAGCTCCATAACCAGGTGAACGGGACGGAGTGGTCCTGGAGGAACCTGAACACGCTGTGCTGGGCCATCGGCTCCATCAGCGGAGCCATGCACGAGGAGGACGAGAAACGGTTCCTCGTCACAGTCATTAAGGACCTGCTGGGGCTGTGCGAGCAGAAGAGGGGGAAAGACAACAAGGCCATCATCGCCTCCAACATCATGTACATTGTAGGGCAGTACCCACGGTTCCTCCGCGCCCACTGGAAGTTCCTCAAGACGGTTGTCAACAAGCTCTTCGAGTTCATGCACGAGACGCATGACGGCGTGCAGGACATGGCGTGTGACACGTTCATCAAGATCGCTCAGAAGTGCAGGAGGCACTTTGTTCAGGTGCAGGTCGGGGAGGTCATGCCCTTCATCGACGAGATCCTGAacaacatcaacaccatcatctgCGACCTGCAGCCgcagcagGTGCATACGTTCTACGAGGCTGTAGGCTACATGATCGGCGCTCAGACAGACCAGGCAGTGCAGGAGCACCTGATAGAGAAGTACATGCTGCTCCCTAACCAGGTGTGGGATAGCATCATCCAGCAGGCCACCAAGAACGTGGACATCCTGAAGGACCCGGAGACGGTGCGTCAGCTGGGCAGCATCCTGAAGACCAACGTGAGGGCGTGTAAGGCCGTGGGTCACCCGTTCGTCGTGCAGCTGGGACGCATCTATCTAGACATGCTCAACGTCTACAAGTGTCTGAGTGAGAACATCTCCTCTGCCATCCAGACCAACGgtGAGATGGTGACAAAGCAGCCTCTAATCAGGAGCATGCGCACGGTGAAGAGAGAAACTCTGAAGCTCATCTCTGGCTGGGTCAGCCGTTCCAACGATCCCCAGATGGTCGGGGAGAACTTTGTTCCCCCTCTGCTCGAGGCCGTGCTGATCGACTATCAGCGGAACGTCCCTGCCGCTCGAGAGCCTGAAGTGCTCAGCACCATGGCAACCATCGTCAACAAGCTCGCAGCCCACATTACTGTGGAAATCCCCAAGATTTTCGATGCTGTATTTGAGTGCACCTTAAACATGATCAACAAGGACTTTGAGGAGTTCCCAGAGCACAGGACAAACTTCTTCTACCTGCTGCAGGCGGTGAACTCGCACTGCTTCCCCGCTTTTCTGTCCATCCCGCCGGCGCAGTTCAAACTGGTGCTGGACTCCATCATCTGGGCGTTTAAGCACACCATGAGGAACGTAGCTGACACGGGTCTGCAGATTCTGTACACGTTGCTGCAGAACGTGGCCCAGGAAGAAGCTGCAGCTCAGAGCTTCTATCAGGAGGCAAGCTGCAGCGACATCCTGCAGCTTCTCTTCTCAGATGCGTCACCGATCACGTCCCACACGGCGGGTTTGACGATGCACGCCTCCATCCTGGCCTACATGTTTAACCTAGTTGAGGAGGGCAAAATCAGCATAACCCTGAACACAGGCACCCCCATCAACAACCAGGTCTACGTACAGGAATATGTGGCCAACCTGCTGAAAACTGCCTTCCCACACCTACAAGACGCGCAGGTGAAAGTATTCGTAACCGGTCTGTTCAGCTTAAATCAGGATATTCCTGCGTTCAAAGAGCACCTTCGGGACTTCCTGGTGCAGATAAAGgagtttGCCGGTGAGGACACCAGCGATCTGTTCCTGGAGGAGCGAGAGACGTCGCTGCGTCAGGCTCAGGAGGAGAAACACAAACTCCAGATGTCCGTGCCGGGAATCCTCAATCCTCACGAACTCCCAGAGGAAATGTGCGACTGAGCTTCGCGCGCGCTGGGGCGTCTTTTCGGACGCAGGAAAGAACGAATCGTGAacaaaagagtgtgtgtatgtgcgctcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtacatacagagATTTTGCAGTAGGATGAAGATGGAAGAGGAGTGTAAATTTCAACCAAATCAACTCCCAAATGTCCATCACTCAGTCCATCCAAGTCCCCGCCCacttttcccctcttttcttttttttttttttttttttttttttttttttttggagtgtgtTTTATAAGGAGAGAACTGATGCACTGTAAATATTCCCATGTTAATCAGTTGTGTTGGGTTTCTTTTAGTTTCATCTCACAGAATAACATGTTCACACAAGTTCACATATTTGAGGACGCCTCCCATCAACTCTTCTCATCCGTttgttaatttgtaaaatagaTTAATTAACGCAGGTTAATGAAGAGATGGACGGAAGAGGACTGACCCACAGGAAGAGGAACGGCCTTCTCCTGACTGGCACAGCAATTTGAATGTGATGGTTGATTTGCAGAACTGAAAGatgctgctctttttcttttctttttgctttatattgtcttttaaattttttttttcttcagttttgctTACGTTTTGTTTTGGGcttatgtttttgggttgtgtttttt
>XM_034300308.1
CGGGCTGAAAACTAAACCGAGATGGAATATCCCAGTCTGAACCGGTTTCAACCGGTCTTGGGTTTGTTTGATGCACGAGCTGAGAGAAGAGCTGGTTTCCAACAGACTCTTTCAAGGCTTTTacgtgtttttttgtttgtttgtttgtttttattttcctgacATAGATCCAACAATAAACTAACGTCCTGCTTTAGTTTGTGATTGAGACCAGGGAATGCTAGCTAGCAAGATAGCATAGCAACTCCAGGCATTATAATCAgtgacattagctagctagcgagTTAGCACTTAGGCTAAGTTGTACCAGGGGTCACGCGAGCTGTCTCTGGACTCGGATTAATCGCTAGAgtgttagctaactagttagcattgtttttttatttttttttattttaaatatttaatgtatatgaTTAGTTCGCTCtggtaaaattaaaaatcaactCGCTAGCTATTTAACTAGCCAGTTATCATCACGTTGCCCGTGTGCATCCAGTTCAATGGTTATGTTCGTTAGCTAGCAGCTAGCATATTGCTAACGCGTCATCATGAGATAAACGCAGTGCTGTAACTTGCGGTTTATTTGAATTTTGCAGTTTTAAAGCGTTAGCGAGTTTAAGCAGCCACAATCCTGAACATCATTTCAACGCAAAGaggagtgtttaaaaaaaaaagcagCTCTATGCCAGCAGATATGACAATGTTAGCGGACCATACAGCCCGGCAGCTGCTGGACTTCTCTCAGAAGCTGGACATCAACCTGCTCGACAACGTGGTCAACTCCATGTACTACGATGTCGGCTCTCAGCAACGGCTGGCACAGGAAGTCCTGACTAACTTGAAGGATCACCCGGATGCATGGACCAGAGTGGACACCATCTTGGAGTTCTCTCAGAACATGAAGACCAAATACTACGCCCTTCAGATTCTGGAAACTGTCATTAAAACACGCTGGAAAATTCTCCCGAGAAACCAGTGTGAAGgAATTAAGAAATACGTCGTGGGGCTGATTATCAAGACGTCCTCAGATCCTTCTGTGGTCGAGAAAGAGGGAGTTTATCTGGCAAAGCTGAATATGATCTTGGTGCAGATCCTGAAGCAGGAGTGGCCGAAGCACTGGCCCACGTTCATCAGCGACATTGTGGGAGCGAGTCGCACGAGCGAGAGCCTCTGCCAGAACAACATGATCATCCTGAAGCTGCTCAGCGAGGAGGTGTTCGACTTCTCCAGTGGACAGATGACTCAGGTCAAAGCCAAGCACCTGAAAGACAGTATGTGCAACGAGTTCTCCCAGATTTTTCAGCTCTGCCAGTTTGTCATGGAAAATTCCCAGAATGCTCCACTGGTCCATGCCACATTGGAGACCCTCCTGCGCTTCCTGAACTGGATTCCACTGGGCTACATTTTTGAGACCAAACTCATCAGCACCCTGGTTTACAAGtttctgaaCGTTCCGATGTTTCGAAACGTGACTCTGAAGTGTCTGACGGAAATCGCCGGCGTCAGCGTCAATCAGTACGAGGAGCAGTTCGTCAGCCTCTTCACTCTAACCATGATGCAGCTcaaacagATGCTGCCTTTGAACATGAACATCCGTATGGCGTACTCGAACGGGAAAGATGACGAGCAGAACTTCATCCAGAACCTCAGCTTGTTCCTGTGCACCTTCCTCAAAGAGCACGGGCAGCTGATTGAGAAGAGGCCCAACCTCCGGGAAACGCTCAtggagGCTCTCCACTACATGCTGCTTGTCTCTGAGGTGGAGGAGACGGAGATCTTTAAGATCTGTCTGGAGTACTGGAACCACCTGGCAGCCGAGCTGTACAGAGAGAGTCCGTTCAGCACTTCCACCTCACCGCTGCTCTCCGGCAGCCAGCATTTTGACGTGCCTCCACGCAGACACCTCTACCTGCCCGTACTCTCCAAGGTGCGTCTCCTGATGGTGAGCCGCATGGCTAAACCGGAGGAGGTGCTGGTGGTGGAGAACGATCAGGGTGAAGTGGTGAGGGAGTTCATGAAGGACACCGACTCGATCAACCTCTACAAGAACATGAGAGAGACTCTCGTGTACCTGACCCATTTGGACTATGCGGATACGGAGAGGATCATGACGGAGAAGCTCCATAACCAGGTGAACGGGACGGAGTGGTCCTGGAGGAACCTGAACACGCTGTGCTGGGCCATCGGCTCCATCAGCGGAGCCATGCACGAGGAGGACGAGAAACGGTTCCTCGTCACAGTCATTAAGGACCTGCTGGGGCTGTGCGAGCAGAAGAGGGGGAAAGACAACAAGGCCATCATCGCCTCCAACATCATGTACATTGTAGGGCAGTACCCACGGTTCCTCCGCGCCCACTGGAAGTTCCTCAAGACGGTTGTCAACAAGCTCTTCGAGTTCATGCACGAGACGCATGACGGCGTGCAGGACATGGCGTGTGACACGTTCATCAAGATCGCTCAGAAGTGCAGGAGGCACTTTGTTCAGGTGCAGGTCGGGGAGGTCATGCCCTTCATCGACGAGATCCTGAacaacatcaacaccatcatctgCGACCTGCAGCCgcagcagGTGCATACGTTCTACGAGGCTGTAGGCTACATGATCGGCGCTCAGACAGACCAGGCAGTGCAGGAGCACCTGATAGAGAAGTACATGCTGCTCCCTAACCAGGTGTGGGATAGCATCATCCAGCAGGCCACCAAGAACGTGGACATCCTGAAGGACCCGGAGACGGTGCGTCAGCTGGGCAGCATCCTGAAGACCAACGTGAGGGCGTGTAAGGCCGTGGGTCACCCGTTCGTCGTGCAGCTGGGACGCATCTATCTAGACATGCTCAACGTCTACAAGTGTCTGAGTGAGAACATCTCCTCTGCCATCCAGACCAACGgtGAGATGGTGACAAAGCAGCCTCTAATCAGGAGCATGCGCACGGTGAAGAGAGAAACTCTGAAGCTCATCTCTGGCTGGGTCAGCCGTTCCAACGATCCCCAGATGGTCGGGGAGAACTTTGTTCCCCCTCTGCTCGAGGCCGTGCTGATCGACTATCAGCGGAACGTCCCTGCCGCTCGAGAGCCTGAAGTGCTCAGCACCATGGCAACCATCGTCAACAAGCTCGCAGCCCACATTACTGTGGAAATCCCCAAGATTTTCGATGCTGTATTTGAGTGCACCTTAAACATGATCAACAAGGACTTTGAGGAGTTCCCAGAGCACAGGACAAACTTCTTCTACCTGCTGCAGGCGGTGAACTCGCACTGCTTCCCCGCTTTTCTGTCCATCCCGCCGGCGCAGTTCAAACTGGTGCTGGACTCCATCATCTGGGCGTTTAAGCACACCATGAGGAACGTAGCTGACACGGGTCTGCAGATTCTGTACACGTTGCTGCAGAACGTGGCCCAGGAAGAAGCTGCAGCTCAGAGCTTCTATCAGGAGGCAAGCTGCAGCGACATCCTGCAGCTTCTCTTCTCAGATGCGTCACCGATCACGTCCCACACGGCGGGTTTGACGATGCACGCCTCCATCCTGGCCTACATGTTTAACCTAGTTGAGGAGGGCAAAATCAGCATAACCCTGAACACAGGCACCCCCATCAACAACCAGGTCTACGTACAGGAATATGTGGCCAACCTGCTGAAAACTGCCTTCCCACACCTACAAGACGCGCAGGTGAAAGTATTCGTAACCGGTCTGTTCAGCTTAAATCAGGATATTCCTGCGTTCAAAGAGCACCTTCGGGACTTCCTGGTGCAGATAAAGgagtttGCCGGTGAGGACACCAGCGATCTGTTCCTGGAGGAGCGAGAGACGTCGCTGCGTCAGGCTCAGGAGGAGAAACACAAACTCCAGATGTCCGTGCCGGGAATCCTCAATCCTCACGAACTCCCAGAGGAAATGTGCGACTGA

Function

symbol description
xpo1 Enables nuclear export signal receptor activity. Involved in nuclear export and regulation of proteasomal ubiquitin-dependent protein catabolic process. Located in several cellular components, including annulate lamellae; kinetochore; and nucleus. Part of ribonucleoprotein complex.

NR:

description
PREDICTED: exportin-1-like

GO: NA

KEGG:

id description
K14290 XPO1, CRM1; exportin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300307.1 True 3913 mRNA 0.51 24 14854881 14874665
XM_034300308.1 False 3907 mRNA 0.51 25 14855572 14878584

Neighbor

gene id symbol gene type direction distance location
usp34 usp34,LOC107746122,LOC107729952 coding downstream 2928 14787119 ~ 14851953 (-)
commd1 commd1 coding downstream 94843 14751030 ~ 14760038 (-)
zgc:66455 NA coding downstream 117021 14732575 ~ 14737860 (-)
mast1a LOC108258536,LOC108441252,LOC100710771 coding downstream 213427 14586194 ~ 14641454 (-)
atg4da atg4d coding downstream 275663 14569640 ~ 14579218 (-)
fam161a fam161a coding upstream 1662 14880246 ~ 14888909 (-)
cct4 cct4,LOC107700877,LOC107594293 coding upstream 11638 14890222 ~ 14898142 (-)
LOC113537617 NA coding upstream 74977 14953561 ~ 14958201 (-)
spast spast coding upstream 182337 15060921 ~ 15072345 (-)
rln3b rln3 coding upstream 196087 15074671 ~ 15077616 (-)
G376171 NA non-coding downstream 115074 14739369 ~ 14739807 (-)
G376127 taf5l non-coding downstream 193570 14657946 ~ 14661311 (-)
G376093 NA non-coding downstream 322197 14532367 ~ 14532684 (-)
G376055 NA non-coding downstream 388373 14462142 ~ 14466508 (-)
G376050 snrpb2 non-coding downstream 467006 14386338 ~ 14387875 (-)
G376364 NA non-coding upstream 156581 15035165 ~ 15035466 (-)
G376574 NA non-coding upstream 166128 15044712 ~ 15045359 (-)
G376602 NA non-coding upstream 220432 15099016 ~ 15101012 (-)
G376608 LOC108259073 non-coding upstream 253433 15132017 ~ 15132290 (-)
G376613 NA non-coding upstream 269201 15147785 ~ 15147985 (-)
b3gnt2a LOC108259010 other downstream 105147 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 142235 14697239 ~ 14712646 (-)
G376143 NA other downstream 170553 14682387 ~ 14684328 (-)
meis1a meis1 other downstream 330365 14460283 ~ 14524516 (-)
dand5 LOC108258523 other downstream 578344 14274327 ~ 14276537 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other upstream 32078 14910662 ~ 14961052 (-)
triobpa LOC108259073 other upstream 238928 15117512 ~ 15129256 (-)
dpy30 dpy30,LOC107684266 other upstream 533840 15412424 ~ 15458205 (-)
G376956 NA other upstream 1039044 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 1051169 15929753 ~ 15942730 (-)

Expression


Co-expression Network