LOC113535753 (LOC108258306,LOC108439384,LOC106595798)


Basic Information

Item Value
gene id LOC113535753
gene name LOC108258306,LOC108439384,LOC106595798
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4488149 ~ 4504739 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300309.1
GCCAAGGCGCGACACATGCGCGGGAGATGTGATTCACATCAGGTTCATCCCCCTGATACATGAAAGCTTTCCCGAACGGACATAACAGATGGGATGTAGATTGGGAGTTGTTTAATGGACAGTGAAAGATGGCAGACAGATCGGATTTGGTGAAGGCGCAGGGCAGGAGCAGCGCACAGCACCACAACGCCAAAGACACCTCACTGCGCCTCCGAGTTATCTTCTTAGACGAAAGCGAGCGAGTTTTCGAGGTCGAGCAAAAAATCCTGGGCTGTGACTTTTTCAacaaagtgtgtggacaccttaAGCTCCTGGAGAAAGAATACTTTGGCCTGGAATTCCGTCATCATAATGGCAACTATGTGTGGCTTGAACTTTTGAAACCACTggcaaaacaaatcaaaaACACCAGTGAACTGGCATTCCGTTTTATTGTGAAGTTTTTCCCACCAGACCCAGGCCAGCTGCAAAAAGGTTTGACCAGGTATCTATTTGCTCTGCAAATAAAACAGGATTTGTCAAATGGAAGCCTCACGTGTAATGACAACAGTGCTGCGCTGTTGGTCTCTCATATATTGCAGGCAGAAATTGGGGATTACAATGAAGAGTTGGATGCGCACCACCTAGAGAATAAGCAGTATGTGCCAAATCAGGAGTACCTGGACCACAAGATTATTCGCTTTCATAAGAAACACAGAGGTCACACTCCAGCCATGTCAGATGTGCATTTGTTGGAGGTTGCCCGGAAATTGGATATGTATGGTATTCGACCACATCCTGCTCATGATGGAGAAGGCATGCGGATCAATCTGGCTGTTACCCACATGGGTGTACTGGTATTTCAGGGTAACACAAAAATCAATACCTTCAGCTGGGCCAAGATCCGCAAATTGAGTTTCAAGAGGAGGAATTTCCTTATCAAACTACACACAGAGGCTGGGCCTTCACGGAGGGACATGGTTGAGTTCACCATGGCAAGCAGAGATATTTGTAAAACTTTCTGGAAGATGTGTGTGGAGTATCATGCCTTCTTCCGTCTAGCTGAGGAGCCCAAGCCATATCAAAAGTCACTGTTTTCCAGCAAGGGATCCAGGTTCAGATACAGTGGCAGGACACAAAAGCAACTCCTAGAGTGTGTTGGCACTGGCGAATACAAACATCTACCATTTGAGAGGTCAAACTGCAAGCTTGCCCATGAATCTCGGCAATGCAAGTCGTCCCCAGATTTGCTCACTGATGTATCCAAACAGCTTTACGAGCAAGCCAATCAATTGTCCCACCTTGATGTTTCAAAGCATGGCACAAATGTATTTGCTGAGGGGCTTTACCGGTCCTGTCCCTTGTCAAGACTGCCTGCCAAATCAAGCAGGGTTGCATCACCAAAACCACGTTCCATGTCCACATCAGGGGCAGAGCGTCAAGGCAGAAGCTCCCAAAGACCTGGGGCAAGGAGACATCAGTCCCCTAGCTCTCAGCACCTGGTCCTTCTCTATCCCAACAGCCCCCACCTGCAATTCCATCCAGTGCTGCCAACTTTCCCACTTGCAACTTACCCTTTTTTGCTACAAGACTCCACATCATCTTCCTTAGACCGTCTCACACAAGCTCACCAGAATTTTAAGCCTATGAAGTATTTGACTAGGCAAACAGGCCACTCCTGTTCACCTGCTTCGTCTTTGTCACCGCCACAACGGCAGCAGCATCTGGAAAGGCTTCAACTCTCTGGAATTGGATTGGCTGAATCTAGACTGTGCCCCCTATCAGGAGGACCACTGGGGCTTGGGTTAAACAGAAGGCACAACATTGGAAAACTAGAAGCAGGGCACTACAGTGATGACTCTTCCTTTCAGAGTGCATTACCTTGCCGAGCCTCAAGCCAACCAGATGTGAAGTTCCAGAGATCTGCACTAGCTTCTTCAGCTGCTGCATATGCTTCAGAGTATCGGCCTCTGGGGTATTATCCCCACCTGTCACAACACCGGGTCCCTACTAGGCCAACCTACCTTCCACTAAGCCCTGCCCCTTTGCCAGAGAGACCCACATCTTTATGTGTGCTCGGCACAGGCAGTTACAGTGATTCAGACTCTGAACTCTTTTATCCATGTTACTGTCCTGCTGTAGGGAAAGTGGTACATTCTGGTCCACTAGCGCGTATGCGTTTCTCATCTGGAAGCCTTCAGCTAGATGAGgaagagggagaagaggaggaagaggatgacATGTGCAACCAGAGTGATGGGGAAAATACTGCTCTTACCTCTGTCAAGGACTATAAAGATTACTGAGAATGGCAATGCTTTTCAAGATTCCCACCTTCTCCTTTGATAGCTGTCATAAATCAGTGGGATCAGTATGGGTGAAGCATGACTATAGGTGCTGTAGTTGCTTTTCTTCTGGAAGCGATCCTGTCCCTGTTTCTGACTAGAAGGACCTAAAAAAAGAGTCATGGAATCTGGAGCAGCCAGGAGCATAGAGACTGTGGGAATCATGACAATAACTACATCAGGACCTGgagcacagacagacaaaggGAGAGAGGAAACACAAGGAGCTACATCTAAAccaccacatcaggttccatttAAGTTGGAATCATGACTGGAAGTCACGAACTTGGGTGACAGAAGAGTGGAACCAGGAAACAAGCATG

Function

GO: NA

KEGG:

id description
K23971 FRMD7; FERM domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300309.1 True 2650 mRNA 0.48 13 4488149 4504739

Neighbor

gene id symbol gene type direction distance location
LOC117596198 NA coding downstream 24935 4463108 ~ 4463214 (-)
LOC117596197 NA coding downstream 26834 4461209 ~ 4461315 (-)
LOC117596196 NA coding downstream 28726 4459317 ~ 4459423 (-)
LOC113535829 NA coding downstream 30608 4457435 ~ 4457541 (-)
LOC113535432 slitrk5,LOC108411062,LOC107558902,LOC107730401,LOC107677853,LOC107561275,LOC107698126 coding downstream 870029 3611719 ~ 3618120 (-)
cnpy3 cnpy3,tnrc5,LOC102798477 coding upstream 6531 4511270 ~ 4517988 (-)
LOC117596183 NA coding upstream 19763 4524502 ~ 4524784 (-)
cfap221 cfap221 coding upstream 91691 4596430 ~ 4618808 (-)
knstrn knstrn coding upstream 114462 4619201 ~ 4627241 (-)
brat1 brat1 coding upstream 564621 5069360 ~ 5112747 (-)
G370468 NA non-coding downstream 41043 4446458 ~ 4447106 (-)
G370425 NA non-coding downstream 346021 4141922 ~ 4142128 (-)
G370418 NA non-coding downstream 501527 3986205 ~ 3986622 (-)
G370416 NA non-coding downstream 504570 3983111 ~ 3983579 (-)
G370415 NA non-coding downstream 505209 3981710 ~ 3982940 (-)
G370665 NA non-coding upstream 300141 4804880 ~ 4811748 (-)
G370663 NA non-coding upstream 391488 4896227 ~ 4914035 (-)
G370699 NA non-coding upstream 541301 5046040 ~ 5046246 (-)
G370702 NA non-coding upstream 554114 5058853 ~ 5059054 (-)
G370705 NA non-coding upstream 557405 5062144 ~ 5062436 (-)
LOC117596167 NA other downstream 1634938 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 1913678 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 2655420 1824204 ~ 1832729 (-)
G369586 NA other downstream 2692925 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 2876483 1538453 ~ 1611666 (-)
G370658 NA other upstream 338590 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 884165 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 1025253 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 1437300 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 1510987 6015726 ~ 6033393 (-)

Expression


Co-expression Network