LOC113524847 (LOC108258823)


Basic Information

Item Value
gene id LOC113524847
gene name LOC108258823
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 19034511 ~ 19105679 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300335.1
aatgaagagagagagacagagagagagagacagagagagagatcagttgGTTCTACAGGTTCTGAAGGATGGCGTTGCTCTTCATGCTGCTCTGTGctgtctcactctctgatgGGTTTAACATTGATGTATTGAACCCAGAGCCATTCATAGGAAATAAAGAGGACTTTTTTGGATACAGACTGCTGCAATATCAGTCTGACAAGATGAAACAAATTATCGTCAGCGCTCCATTAAGCGCAAACAGATCAGGAGCgatttttaaatgcacagtgGAGAAGGGAAACTGCAGCCATTTGTATCAGCCAGACTTGAAGGCGATCAGGTTCTTTGGGATGTCGATGGCAGTGAGGACGTCTCCATCAGCCACGCTCACTAGTTGCAGTCCGAGTTTCACTCATGAGTGTGATGGAAACTCATATCTGAATGGAATCTGTTACCAGTTCAACAGCAAGCTGAACACCGTCACCAACATCGCCGCTTTCCAAGAGTGCACGAGGGGTAAAGTGAACCTGGTCTTCCTTTTCGATGGCTCCAGCAGCATGCAAGCCTCCGACTTtgataagaataaaaaattcatATGGGACGTTGTAACAAAACTCAAAAACTCATCCATCGAgtttgCTGCTGTTCAGTTTTCTAAGACATTCAGTACAGTTTTCACCTTTAAAGATTATGTTAACGGCATGGCGAAGAAGAAACTTGATGAAGAAAAGCACATGAAGTCACTCACGAACACACACAAGGCCATTGACTTCACCCTtaagaatttgtttaataatgtggAGTCCGGTGCAGATCCTGAGGCTACTAAAGCCCTGGTCATCATCACAGATGGAAGTCCTTCTGATATAAACACTAACGAGATACAGCGCTGTGAGAAACTCAACATCGCTCGCTTTATCATCGGGGTGGGGAAAATAGACAATTTTGAGAAGCTGAATAAACTTGCCTCAGAGCCGAAAGAGAGCAACATCTTCAGGATTGAAAACTACGATGGACTAAATGGACTTCTGGATAAACTGCAAAATAAGATCTATGGCATCGAGgGAGCTCAGGGAAGGAACTATAGAGAAGAGCTGTCTCAGAGTGGATTCAGTGCTGCCAGTGACAAGGACACTCTCATTCTGGGAGCTGTTGGATCTGATAATTGGCGTGGAATGCTGTATGAGGTTACAGGATCCGAAGCTGGGATGGAAATCAAAGACGTAAACCTAAATAATGACTCGTACAATGGTTACTCTGTTGTGGTTGGACGGAGAGACAGAGTTTCTCTTGTGTTCTCTGGAGCACCAAGATCTAATCACAGCGGTCAGGTGACTCTGTTTAAAAAGATGACCCACAAATGGGAAGCCATGAGCAACATCTCTGGAGAACAGATCGGCTCGTATTTTggtggatcagtgtgtgtgttagacccGAACTCCGACAACAACACTGACTTCCTCGTGGTTGGAGCTCCGCTGTATTACAAACCTCATCCTCAGAGAGAGGGACGGATATACATCTACAGACTCACACAGCagctGAAGTTGGAGAAGGAGTTGGAGATATGTGAATCAGCTCAGGGTCGGTTTGGGATGACTCTAGCTGCTGTAGCAGATCTGAATGGAGACCAGCTGCAGGATTTAGCTGTTGGAGCTCCACTGGAAGACAATCAAAAAGGagccatttacatttacctcgGCAACCATGAACACGGCATCCGCCCCAAGTACAGCCAGagaattGCGGCAAGTTCCATCTCTAAGCAGCTTCAGCATTTCGGTTTGGCGATCGATGGTGTGATGGACATGGGACAGGATGGTCTGACGGACATTGCTGTTGGAGCACAAGGGACCGTTTTACTCCTGAAAACTCGGCCGGTTGTGTCCATATCAGTGAAGCTCAGTTTCTCTCCTTCTGAAATCAGCCTGAATAAGTTCGACTGCCTGGGCAGCTCGGAAAATGCATTTGCCATCATTACTCTGAACACCTGCTTCAGTATGACAGAGAACACCAACAGCAAAGGGGCAGTGAAGAGTGGTCTGAACGTGTCGTTGGAGCTCaatgctgatgctgtgagaCAGGACAGTCGGGCGTTTTTCATTAAGGAAGAGAAGACGTCCAGGagtctggtgatgtctgtgcTGCTGGACTCAGAGTTTTCCTGTTACAACCATACAGTCTATATGCACaGCTGTGTGAAGGACACAGTGTCTTCGGTGTTATTCCGACTCAACTTCCACCAGTCTGATCATCAGCCGAACAGCTCCAACTCCATACTCAACATCGACAGCAAGACCACGGCTCATGTAGAGgtTCCCTTTCAGATTAACTGCAAAAACAGGAGCTGTGTATCAGACCTGCAGCTGGACTTTAACTTCCTgaacAGCACATTGCTGGTGGTGGACCAGGCATCTTTTATCATCCATGTGACTCTACTGAATAAAGGAGATGACTCGTTCAACACCAGCGTGGTTCTTTTCTACCCTCCTGGATTATCACTCTCGATATTCAAGACCATTGAGTGGAACAGAAGGACTCTGAGCAGTTGTGGAGATCGTGATGACGGAGCACTGAATAAAACCACCTGCAGTATCAGTTTACCGGTTTATCGCAGAGACACGCGTGCCGTGTTTGAGGGTGTGTTCCGCATCTCACACTATTACAACTGGACTGACAGCATGCAGATGACACTCGTGGCCAGCagtgataACAATGGAAATACAAGTATCACCACAGTGACGAAGACTTTGCCTGTTCAGTTTAGTGTAGATGTGGCCATCAGCCCtgttccTGAGCTTTGTAAAACATATCTGAATTTATCTTTGGAAGATAAAGGCCCAAAAAATATCACTCTTGTGTATAAGgtgAGTAATCTGGGACTAAAAGATCTGCCTGTAGCAGTAAGCTTCCGGATGCCATCTCAGACAAACTTGCATGATCTGCACAATCACACCATCACTGTGTCTCAGAATGTTACAGCCTGTAACATCGTACCACCTGAGAAACATGCTGACTGTCCATTTAAGTGGTGTGCGAACTTCATGTGTCATTCGTTCTCACTGGATCCCAGGTCTGCTGTCCAGTTTGAGCTGAGGATGCTCATCAGCTTCCCTAATAAACAACAATACACAGggAAATTTTCTTTCAGTGAGTTTAGGAAGGAAGAtgatttttctgtctttgctcAGCTGGTCGTTGATAAAAGCTTTATCATCAGATATCCAGTGAGaacgACACAAGCAGATTTCACCAGGCTAAGATCAGTGTGAAAGCAGAGCTGGTCATTCCTCCTAATATGATTATGATCAGAGGaacaggtggaggaggtggattTCTCctgctcatcatcatcttcatagTGCTGTTGAAGtgTGGTTTCTTTAAGCGTACACGTCATGAATTGTGTGAAGAAGGGAATGAGAACAGtgctgaagaagaagatgaagtgTGCAGTGCTGAAACAAATGGAAAGATGGAAGAATGTCCTTCCACATCTGAAGAGAAACCGTTCATCCCCGCTGGAGGAAACAATGTTGTGTCAGAaaatggagggagggagaatggagaaatggagaaaggagaaagtgTGGAGTGAAAAGTCTTCACTGATTGAGCTACTGATTGTTTATTAGCATGATTCAACTTCTTTAGCTTAgctacagtcccctctgaaaatattggaacagcaaggccaattctttcctttttgttatacactgaagacatttgggtttgagatcaaaatataTGAAGATTTTATATGAggtagatcagaatttcagttttcatttcctgatatttacatctagatgagTTAAACATCtttttggtggcagaccaccaaATTTTTTGTGAACAAAAATATTGgaccatgtgactgacaggtgtttcttgttgcccaggtgtgccgtgttagtgaagtgaagtgacgtttAGCCAAGTGTGGAGAcccggaatttgtgctctgtatttaacccatccaagtgcgcacacacacccggagcagtgggcagcctttttgctgcggcgcccggggagcagttgggggttcggtgccttgctcaagggtctcacgtcagttgtggtattgagggtgggagaaaGCAAggcattttgaagctgagaaaagagggaaaatctatcagagccattacacaagcattgggcatagctaAATACAACAGTTAGGaatatcctgaaaaagaaagaaacatttacagttacagttagaAGCCCAgtagacacccttatccagagtgacagaggaaatatagtaagaaaaacacagacaacacaatatttttttaaataaagtgctaatttatgtATTCCATGAACAGGTAGATCTTTAGTCATTGTTTGAAGTCTGCCAGTGACATCTAGGAGAAATTCATTCTACCACcgaggtgccagaacagagaagagtcttgatgacTGTAGAGTCTGAAtagagcagtgctagaggatcagatgGAGCGTGGTGCTGTGCGGGATGTGATAAGTTCCttgaggtaagtgggtgctggtccgtttttggttttgtaggcgagcatcagtgttttaaatcttatGTAGCAGCTATAGGATGCctagcgtagcaatggggtggtgtgggagaattTGGGGAGGTTGAGAAAAAGTCGTGCAGCtccattctggatcagttgcagagatTGAATGGCACTCAGAGGCAGAGATGCCAGGggcgagttgcagtagtccagtctcgaaatgacaagggactgaacaagcacctgagtggcctgtggggagagaaatggacgaatccttctgatgATGTGGTCTGAATCCTTCAGACCTGCAAACGagtcatcagcagtaagaatcagaaaaCCAGATTGAAATTCCAGAGAATACTTAAATGAGCCACAAACATTCTGGAACCAAGaataacctctaccaaagtgatggaaaggccaaagtgtggagaaagaaagaacctgCTCATGATCCAtaacatacgagctcatgggtgaagcttggtggaggtagtgtcatggcttgggctgcTTCTGGAATAGACTCActaatatttattgatgatggaactcatgatgatAGCAGCAGAATGCAatgaaaagaagaatgcaacagtttggtgacgtCAGTGGATCACCGGCtcgatgcagttattgcaatgttatttactttaatttactttagtactatctgttcctatattTTTCCTCACAAAAAATTGAGTGGTCGGCTACCCAACTGCTACCCAATGCttccatgttctaagttgtttaacacgtctagatataaatatgcgga
>XM_034300336.1
aatgaagagagagagacagagagagagagacagagagagagatcagttgGTTCTACAGGTTCTGAAGGATGGCGTTGCTCTTCATGCTGCTCTGTGctgtctcactctctgatgGGTTTAACATTGATGTATTGAACCCAGAGCCATTCATAGGAAATAAAGAGGACTTTTTTGGATACAGACTGCTGCAATATCAGTCTGACAAGATGAAACAAATTATCGTCAGCGCTCCATTAAGCGCAAACAGATCAGGAGCgatttttaaatgcacagtgGAGAAGGGAAACTGCAGCCATTTGTATCAGCCAGACTTGAAGGCGATCAGGTTCTTTGGGATGTCGATGGCAGTGAGGACGTCTCCATCAGCCACGCTCACTAGTTGCAGTCCGAGTTTCACTCATGAGTGTGATGGAAACTCATATCTGAATGGAATCTGTTACCAGTTCAACAGCAAGCTGAACACCGTCACCAACATCGCCGCTTTCCAAGAGTGCACGAGGGGTAAAGTGAACCTGGTCTTCCTTTTCGATGGCTCCAGCAGCATGCAAGCCTCCGACTTtgataagaataaaaaattcatATGGGACGTTGTAACAAAACTCAAAAACTCATCCATCGAgtttgCTGCTGTTCAGTTTTCTAAGACATTCAGTACAGTTTTCACCTTTAAAGATTATGTTAACGGCATGGCGAAGAAGAAACTTGATGAAGAAAAGCACATGAAGTCACTCACGAACACACACAAGGCCATTGACTTCACCCTtaagaatttgtttaataatgtggAGTCCGGTGCAGATCCTGAGGCTACTAAAGCCCTGGTCATCATCACAGATGGAAGTCCTTCTGATATAAACACTAACGAGATACAGCGCTGTGAGAAACTCAACATCGCTCGCTTTATCATCGGGGTGGGGAAAATAGACAATTTTGAGAAGCTGAATAAACTTGCCTCAGAGCCGAAAGAGAGCAACATCTTCAGGATTGAAAACTACGATGGACTAAATGGACTTCTGGATAAACTGCAAAATAAGATCTATGGCATCGAGgGAGCTCAGGGAAGGAACTATAGAGAAGAGCTGTCTCAGAGTGGATTCAGTGCTGCCAGTGACAAGGACACTCTCATTCTGGGAGCTGTTGGATCTGATAATTGGCGTGGAATGCTGTATGAGGTTACAGGATCCGAAGCTGGGATGGAAATCAAAGACGTAAACCTAAATAATGACTCGTACAATGGTTACTCTGTTGTGGTTGGACGGAGAGACAGAGTTTCTCTTGTGTTCTCTGGAGCACCAAGATCTAATCACAGCGGTCAGGTGACTCTGTTTAAAAAGATGACCCACAAATGGGAAGCCATGAGCAACATCTCTGGAGAACAGATCGGCTCGTATTTTggtggatcagtgtgtgtgttagacccGAACTCCGACAACAACACTGACTTCCTCGTGGTTGGAGCTCCGCTGTATTACAAACCTCATCCTCAGAGAGAGGGACGGATATACATCTACAGACTCACACAGCagctGAAGTTGGAGAAGGAGTTGGAGATATGTGAATCAGCTCAGGGTCGGTTTGGGATGACTCTAGCTGCTGTAGCAGATCTGAATGGAGACCAGCTGCAGGATTTAGCTGTTGGAGCTCCACTGGAAGACAATCAAAAAGGagccatttacatttacctcgGCAACCATGAACACGGCATCCGCCCCAAGTACAGCCAGagaattGCGGCAAGTTCCATCTCTAAGCAGCTTCAGCATTTCGGTTTGGCGATCGATGGTGTGATGGACATGGGACAGGATGGTCTGACGGACATTGCTGTTGGAGCACAAGGGACCGTTTTACTCCTGAACCTGAATAAGTTCGACTGCCTGGGCAGCTCGGAAAATGCATTTGCCATCATTACTCTGAACACCTGCTTCAGTATGACAGAGAACACCAACAGCAAAGGGGCAGTGAAGAGTGGTCTGAACGTGTCGTTGGAGCTCaatgctgatgctgtgagaCAGGACAGTCGGGCGTTTTTCATTAAGGAAGAGAAGACGTCCAGGagtctggtgatgtctgtgcTGCTGGACTCAGAGTTTTCCTGTTACAACCATACAGTCTATATGCACaGCTGTGTGAAGGACACAGTGTCTTCGGTGTTATTCCGACTCAACTTCCACCAGTCTGATCATCAGCCGAACAGCTCCAACTCCATACTCAACATCGACAGCAAGACCACGGCTCATGTAGAGgtTCCCTTTCAGATTAACTGCAAAAACAGGAGCTGTGTATCAGACCTGCAGCTGGACTTTAACTTCCTgaacAGCACATTGCTGGTGGTGGACCAGGCATCTTTTATCATCCATGTGACTCTACTGAATAAAGGAGATGACTCGTTCAACACCAGCGTGGTTCTTTTCTACCCTCCTGGATTATCACTCTCGATATTCAAGACCATTGAGTGGAACAGAAGGACTCTGAGCAGTTGTGGAGATCGTGATGACGGAGCACTGAATAAAACCACCTGCAGTATCAGTTTACCGGTTTATCGCAGAGACACGCGTGCCGTGTTTGAGGGTGTGTTCCGCATCTCACACTATTACAACTGGACTGACAGCATGCAGATGACACTCGTGGCCAGCagtgataACAATGGAAATACAAGTATCACCACAGTGACGAAGACTTTGCCTGTTCAGTTTAGTGTAGATGTGGCCATCAGCCCtgttccTGAGCTTTGTAAAACATATCTGAATTTATCTTTGGAAGATAAAGGCCCAAAAAATATCACTCTTGTGTATAAGgtgAGTAATCTGGGACTAAAAGATCTGCCTGTAGCAGTAAGCTTCCGGATGCCATCTCAGACAAACTTGCATGATCTGCACAATCACACCATCACTGTGTCTCAGAATGTTACAGCCTGTAACATCGTACCACCTGAGAAACATGCTGACTGTCCATTTAAGTGGTGTGCGAACTTCATGTGTCATTCGTTCTCACTGGATCCCAGGTCTGCTGTCCAGTTTGAGCTGAGGATGCTCATCAGCTTCCCTAATAAACAACAATACACAGggAAATTTTCTTTCAGTGAGTTTAGGAAGGAAGAtgatttttctgtctttgctcAGCTGGTCGTTGATAAAAGCTTTATCATCAGATATCCAGTGAGaacgACACAAGCAGATTTCACCAGGCTAAGATCAGTGTGAAAGCAGAGCTGGTCATTCCTCCTAATATGATTATGATCAGAGGaacaggtggaggaggtggattTCTCctgctcatcatcatcttcatagTGCTGTTGAAGtgTGGTTTCTTTAAGCGTACACGTCATGAATTGTGTGAAGAAGGGAATGAGAACAGtgctgaagaagaagatgaagtgTGCAGTGCTGAAACAAATGGAAAGATGGAAGAATGTCCTTCCACATCTGAAGAGAAACCGTTCATCCCCGCTGGAGGAAACAATGTTGTGTCAGAaaatggagggagggagaatggagaaatggagaaaggagaaagtgTGGAGTGAAAAGTCTTCACTGATTGAGCTACTGATTGTTTATTAGCATGATTCAACTTCTTTAGCTTAgctacagtcccctctgaaaatattggaacagcaaggccaattctttcctttttgttatacactgaagacatttgggtttgagatcaaaatataTGAAGATTTTATATGAggtagatcagaatttcagttttcatttcctgatatttacatctagatgagTTAAACATCtttttggtggcagaccaccaaATTTTTTGTGAACAAAAATATTGgaccatgtgactgacaggtgtttcttgttgcccaggtgtgccgtgttagtgaagtgaagtgacgtttAGCCAAGTGTGGAGAcccggaatttgtgctctgtatttaacccatccaagtgcgcacacacacccggagcagtgggcagcctttttgctgcggcgcccggggagcagttgggggttcggtgccttgctcaagggtctcacgtcagttgtggtattgagggtgggagaaaGCAAggcattttgaagctgagaaaagagggaaaatctatcagagccattacacaagcattgggcatagctaAATACAACAGTTAGGaatatcctgaaaaagaaagaaacatttacagttacagttagaAGCCCAgtagacacccttatccagagtgacagaggaaatatagtaagaaaaacacagacaacacaatatttttttaaataaagtgctaatttatgtATTCCATGAACAGGTAGATCTTTAGTCATTGTTTGAAGTCTGCCAGTGACATCTAGGAGAAATTCATTCTACCACcgaggtgccagaacagagaagagtcttgatgacTGTAGAGTCTGAAtagagcagtgctagaggatcagatgGAGCGTGGTGCTGTGCGGGATGTGATAAGTTCCttgaggtaagtgggtgctggtccgtttttggttttgtaggcgagcatcagtgttttaaatcttatGTAGCAGCTATAGGATGCctagcgtagcaatggggtggtgtgggagaattTGGGGAGGTTGAGAAAAAGTCGTGCAGCtccattctggatcagttgcagagatTGAATGGCACTCAGAGGCAGAGATGCCAGGggcgagttgcagtagtccagtctcgaaatgacaagggactgaacaagcacctgagtggcctgtggggagagaaatggacgaatccttctgatgATGTGGTCTGAATCCTTCAGACCTGCAAACGagtcatcagcagtaagaatcagaaaaCCAGATTGAAATTCCAGAGAATACTTAAATGAGCCACAAACATTCTGGAACCAAGaataacctctaccaaagtgatggaaaggccaaagtgtggagaaagaaagaacctgCTCATGATCCAtaacatacgagctcatgggtgaagcttggtggaggtagtgtcatggcttgggctgcTTCTGGAATAGACTCActaatatttattgatgatggaactcatgatgatAGCAGCAGAATGCAatgaaaagaagaatgcaacagtttggtgacgtCAGTGGATCACCGGCtcgatgcagttattgcaatgttatttactttaatttactttagtactatctgttcctatattTTTCCTCACAAAAAATTGAGTGGTCGGCTACCCAACTGCTACCCAATGCttccatgttctaagttgtttaacacgtctagatataaatatgcgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300335.1 True 5286 mRNA 0.45 31 19034511 19105679
XM_034300336.1 False 5229 mRNA 0.45 31 19034511 19105679

Neighbor

gene id symbol gene type direction distance location
sp6 LOC108258788,LOC108418435,LOC108418467 coding upstream 359910 18664087 ~ 18674601 (+)
LOC117596189 NA coding upstream 506915 18523161 ~ 18527596 (+)
LOC113524839 NA coding upstream 529771 18498988 ~ 18504740 (+)
LOC117596190 gtf3c1 coding upstream 643861 18385927 ~ 18390650 (+)
LOC113524838 bfar coding upstream 659106 18369044 ~ 18375405 (+)
LOC113525760 zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398 coding downstream 20155 19125834 ~ 19139249 (+)
LOC113525638 zgc:92827,LOC108258818,LOC107665919,LOC107758210,LOC107573835,LOC107668524,LOC107758399,LOC107573875 coding downstream 94348 19200027 ~ 19224919 (+)
LOC117596155 LOC108258581 coding downstream 161804 19267483 ~ 19283319 (+)
G378369 NA non-coding upstream 28895 19005384 ~ 19005616 (+)
G378367 NA non-coding upstream 30466 19003744 ~ 19004045 (+)
G378361 NA non-coding upstream 61322 18972978 ~ 18973189 (+)
G378313 NA non-coding upstream 197400 18834447 ~ 18837111 (+)
G378308 NA non-coding upstream 200289 18799774 ~ 18834222 (+)
G378387 NA non-coding downstream 64163 19169842 ~ 19170049 (+)
LOC113529661 LOC108258823 other upstream 12588 18946082 ~ 19021923 (+)
G378354 LOC108258755 other upstream 92183 18937500 ~ 18942328 (+)
LOC113525834 LOC108258740,LOC108412431 other upstream 212455 18781038 ~ 18822056 (+)
cdc37 cdc37 other upstream 424527 18602567 ~ 18609984 (+)
txndc11 txndc11 other upstream 484542 18382323 ~ 18549969 (+)
G378376 NA other downstream 34126 19139805 ~ 19142137 (+)
LOC113525637 LOC108258744,LOC108413824 other downstream 37002 19142681 ~ 19168611 (+)

Expression


Co-expression Network