efnb2b (LOC108259076)


Basic Information

Item Value
gene id efnb2b
gene name LOC108259076
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2617626 ~ 2633096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300345.1
GGCGGCGGTGTGAACTGCGCGAGCAGCAGTCTGTTCTGTCAAGAAGCgagtatttctttcttttctgatcATGTCAGCATTAGCGGCAGAAGAACtgctattttattattcttaacGCGTCAGAACAGAAGATCAAAGGACgctgtgaagaaaagaaagaaagtcggACCTGGATTCTTTACAGAGTTGTTTATAAAGAGGAAACAAACTGGATCAAGAAGCAAGGACGCAGTTTGGCggaattttcatttgtttttgttgtttttgttgcatGTTGTAGCTCTGAAATAATCCGACTTCAGCTCCTGATCTGGAGATTACCGTTATTTACTGACTTGTCAGGCTGATAATCCCGGGATTGACCTGTAATCCCATTTCACACCATCATGGATCTGATGTGGAAATCTCTGCTCGCGCTGTTCCTCCTCATGTGCAGACTCAAACTCTCCATGTCCACGATTTTAGAGTCCATTTACTGGAACACATCAAATACAAAGTTCGTACCCGGCAAAGGCATCACCCTGTACCCTCAGATCGGAGACAAAATGGACATTGTATGTCCCCGACTCAGGCCAGGCCTCAGCGCGAGTACCCGCATTGAATATTTCCGTGTGTACCTGGTCACACAGGAGCAACTCGAGAGCTGCAGGGTAGCGAAGGGCAACGTGGCGCTACTGAACTGCGACAAGCCCGACCAAGACGTCAAGTTCACCTTCAAGTTCCAGGAGTTCAGCCCCAACCTGTGGGGCCTCGAGTTCCTCAAAGGCAAAGACTACCATGTCATCTctACGTCGAACAGCACGTTAGAAGGCCTGGACAACATGGAGGGCGGCGTGTGCAAAACCAAATCCATGAAGCTGGTGCTCCGAGTGGGACAGCGTCCTACTGACACAGTCTCAGCGAAAGAACTTCCCAATTACTCCGAAAGCGACCACCAGAGCACCTCCAGCAAAGACAACGACGTGCTCGGCAAAGTCGaacaAGACGGAAAAAGTGGTGAGTCTCTGGGCGTGTCTGGATCCGAGGTAGCCCTGTTCACCGGCGTGGCCTCGGGAGCCTTCGTCTTGGTGGTTCTCGTCATCGTGGTGCTGGTGGTGTTCACACGCCGGCGCCGCCGCAAGCACTCGGCTCAGTGTTCGGCTCCGCTGGCGCTTCACCCCATCCCCAAacgcaacaacaacaacaacggcTCGGAGCGCAGCGACATCATCTTCCCACTGCGAGCCTCCGACAGCTACTACTGCCCCCATTACGAGAAGGTGAGCGGGGATTACGGCCACCCGGTCTACATCGTCCAGGAAATGGAGCCCCAGAGCCCGGCCAACGTTTACTACAAAGTCTGAACTAATCAGAACCTTTGAGCCTCGTCCAAGACTGAAAAGAAGGTCTCAATTGAGAGCTTGATTGCtcagaataaatgaatcagagATAAATGACTCTTGGAACGAAGCCACCAACCGTCCAGGAGCCCCAAAAGCCCCCGGAACGGTCCGAATCACCGTCTGGGTTGGGGAATTACTGCTTCTAAAACATGAACGCCGTGTGATTTGTATCAGTCAGGGACCCAAAGCTTTGAGGCTGAAAGTGTCGACTGAGAGCTTGTGCTCAAGTTTCAGCCTGGCTGTAGAAAAGAAACATGCTCCTGGCTCACGCCAGTGAATCAGAGACGAATGACTCTTGGAACGAAGTGAGGACTTTCTCTCCGCTCTCCAGTCAGCGCTTTAATTCATTATGGCAGACTGAGGTGCTACAGTATCAATTCATGACGGCGTTTCGCTCAGGGGAAGAAAACGGAGCCAAACCCGCACAGACATAtagacgtaaaaaaaaaaaactccatagATTtacatcctgaaaaaaaaaacagcatcaggGCAAAAACTTTAAAGCCACATAATCATTATCCATTCATGGGAGGTTTACG

Function

NR:

description
PREDICTED: ephrin-B2a-like

GO: NA

KEGG:

id description
K05463 EFNB; ephrin-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300345.1 True 1924 mRNA 0.50 5 2617626 2633096

Neighbor

gene id symbol gene type direction distance location
LOC113535812 mx1 coding downstream 34576 2575450 ~ 2583050 (-)
LOC113535562 LOC108258657 coding downstream 74760 2523115 ~ 2542866 (-)
LOC113535442 LOC108258868,LOC108258869 coding downstream 102608 2501030 ~ 2515018 (-)
LOC113535761 NA coding downstream 266637 2347228 ~ 2350989 (-)
LOC113535598 LOC108258873 coding downstream 285956 2282791 ~ 2331670 (-)
cpo LOC108258336,LOC108440461 coding upstream 4239 2637335 ~ 2642686 (-)
atic atic,pur9 coding upstream 84961 2718057 ~ 2728695 (-)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding upstream 114172 2747268 ~ 2757237 (-)
tuba8l2 tuba8l2,LOC108411703,LOC103042625,LOC107556293,LOC107750365,LOC100708793 coding upstream 125873 2758969 ~ 2767493 (-)
LOC113535758 LOC108257886 coding upstream 135533 2768629 ~ 2770657 (-)
G369927 NA non-coding downstream 52374 2564712 ~ 2565252 (-)
G369930 NA non-coding downstream 54089 2562804 ~ 2563537 (-)
G369928 pcnp non-coding downstream 55168 2560880 ~ 2562458 (-)
G369926 NA non-coding downstream 57566 2559213 ~ 2560060 (-)
G369924 LOC107702554 non-coding downstream 58817 2555979 ~ 2558809 (-)
G369980 NA non-coding upstream 40459 2673555 ~ 2678270 (-)
G369988 NA non-coding upstream 61053 2694149 ~ 2694577 (-)
G370023 LOC108257886,LOC108258553,LOC108258555,LOC108258552,LOC108258559,LOC108258557,LOC108262136,LOC108258561,LOC108275310,LOC108257788 non-coding upstream 138157 2771253 ~ 2790054 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding upstream 141786 2774882 ~ 2775395 (-)
G370028 NA non-coding upstream 150176 2783272 ~ 2790676 (-)
LOC113535702 mx1 other downstream 43155 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 784897 1824204 ~ 1832729 (-)
G369586 NA other downstream 822402 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1005960 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1340813 1276021 ~ 1276813 (-)
LOC117596167 NA other upstream 210116 2843212 ~ 2853211 (-)
G370658 NA other upstream 2210233 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2755808 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2896896 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 3308943 5942039 ~ 5952313 (-)

Expression


Co-expression Network