LOC113524897 (LOC108258756)


Basic Information

Item Value
gene id LOC113524897
gene name LOC108258756
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18172630 ~ 18175771 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300357.1
gaagcagaagaagaagaagaagcagaagaagcagaagagtcATATGTGGAGGTGGAGAGCAtgatggaggaggagtgtgtggatggaggaggagaagctGTCCTGCAGCTCCACCTGCTCTGTGATCCTCCATCTTCCTGCACGGTGTCCGTGGGGACGGATCTGTCCATGGCCGACATCTCGCAGCTCCACGCTGAAGTGTGTGAGCTCAGAGAGCTGGTGTCTGCGCTGGAGGAAATGCTGCAGCGACAGAAAGCCATAAACACtcgtcagGAGGTGACGGGAGCTACACCAGCGTTGTGCTCCATGTGTAAAGCTGAGCTCAACGCTACACAAGTGCGAGACTctgcacagagtgtgtgtgatgagcgtGAGGCGTGTGAAGTAGAGTGCGCATCACACACTCCGCTGATGATGTGTTCGGTGAAGATGGTGGACTGTAGGACCATGGAGCTGATCCCACCGGTCACGAATGATGAGAAGGAGAATGATGAAGACGGAGAACCGAACACTAACGACGAGGACGTAATTCCCCCCACCGACAGCGATGATGACGGAAGAAAACAACTGCGTGTTAACAAACTCAAACCCCAAACGAGAAAAGACGTGGGACATGGGACAAGCTGTAAGGAACGAGGATCTGAAGTGAACGGAGACGTTACGGAGACATTTACAGAGACTAAGGACCTGAAGAGCGATCGCGGCGTTCGAGAGAGACCGTTCAAGTGCTCGCAGTGCGACAGAAGCTACGGTACAGCGCCAAGCTTGCGGAACCACATGAAGAGACACGCGAAGGAGATGAGGTTCTGCTGTGAGGAGTGTGGGAAGGGGTTCGTGACGTCAGCCGAGCTGAAGCTGCACACGAGTCGACACACGGGGGTCAGCAGCTTCGTGTGTGAGGTGTGCGGACAGAACCTGGCCGGCTCGTCAGGCCTCAAAGCACACATGATGACGCACAGTGACGAGAGGCCGTTCTCCTGCAGGGAGTGTGGAAAGATCGTTCGGACGAAGGGGAACCTCAAGGCCCACCTGAGGACGCACACCGGAGAGAAGCCGTACCGCTGCTCATACTGCGAGAGAACGTTCAGCCACGCGCCGCGCGTCAAGGTGCACGAGCGCTCGCACACCAACGAGAAGCCGTTCAAATGCCAAACCTGCGGAAAGACCTTCTCGCGCCTGGACAGTCTCCGGTCGCACGAGAGCGTCCACACCGGCCTGAAGCCGTACCAGTGCTCGCACTGCGGGAAGAGCTTCCGACAGGCCAGCCACCTGCTCTGTCACGAGAGGACGCACACCGGGGAGCGGCCGTACCTCTGCTCCGACTGCGGGAAGAGCTTCTCCAGCCACGGGCACTTCCGCAGCCACCGGCGCATCCACACCGGCGAGCGGCCCTACCAGTGCACAGCCTGTGGCAAGAGCTTCAGGAAGCAGTTCACCCTACACCAGCACAGCAAGACGCACACCGGAGAGCGGCCGTACAAGTGCACGCAGTGCGACAAGAGCTTCGCACGGACCTGCACGCTGAAGCAGCACCAGAGAATGCACTCGGGGGAAAAGCCGTACCAGTGCGCCATCTGCGGCGAGAAATTCGCCTTCCTTAGCTCACTACACCAACACCGGAAAAAACATGGCCAAGACGGCGTGCATGACATCGTTAGCGCACAGTCCCTCGCTGCAGGGATCTCCTCAGGAACTTAACACGAAACACCGACAGCCTGTAGCTCCATGGGACACTAGGTGGGAAGAGGTTTGGGGAGGCCATTTTAGGTTGATGGTTGTTGGTTTGAAGGCTGTTCAGGTTTCTCAGTGCCATTCAGTGCAATATGCAAATCATTACTGCTCTACACACGTCCAGGTACTAAATAGCCAAGTccatgtgtatagtgtgtgtttttaagacTTAGCATTAAAATATTCCAGTTCTGTAAAcggtcatttatttattagttttttgtCCTTGGTGAGTAGATGTTAGTCGACATCTAGTCAAAAATCAGGTCTTTCTTTTAATTGCGTAAAGCCTTAATCGAGAATGTGAAGCtgatcatatttatatttgacTTGAGTGAATAAATcgataaataaatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300357.1 True 2089 mRNA 0.54 5 18172630 18175771

Neighbor

gene id symbol gene type direction distance location
trnak-uuu_20 NA coding upstream 52893 18119665 ~ 18119737 (+)
soul5l LOC108258805,LOC108413119,LOC102292725,LOC102194468,LOC103383259 coding upstream 220452 17941545 ~ 17952178 (+)
LOC113524905 gpr108,LOC108413117 coding upstream 230296 17919058 ~ 17942334 (+)
LOC113524906 NA coding upstream 256367 17912389 ~ 17916263 (+)
LOC113524915 LOC108258795,LOC108258797 coding upstream 268548 17898843 ~ 17904082 (+)
parn parn,LOC108258427 coding downstream 117987 18293758 ~ 18309052 (+)
LOC113524838 bfar coding downstream 193273 18369044 ~ 18375405 (+)
LOC117596190 gtf3c1 coding downstream 210156 18385927 ~ 18390650 (+)
LOC113524839 NA coding downstream 323217 18498988 ~ 18504740 (+)
LOC117596189 NA coding downstream 347390 18523161 ~ 18527596 (+)
G377770 NA non-coding upstream 62237 18110094 ~ 18110393 (+)
G377759 NA non-coding upstream 96291 18074872 ~ 18076339 (+)
G377757 NA non-coding upstream 98126 18073479 ~ 18074504 (+)
G377756 NA non-coding upstream 114609 18057461 ~ 18058021 (+)
G377752 NA non-coding upstream 130329 18041680 ~ 18042301 (+)
G377813 NA non-coding downstream 28873 18204644 ~ 18206620 (+)
G378114 NA non-coding downstream 136263 18312034 ~ 18313352 (+)
G378129 NA non-coding downstream 152000 18327771 ~ 18328173 (+)
G378136 NA non-coding downstream 166462 18342233 ~ 18351811 (+)
G378118 NA non-coding downstream 182707 18358478 ~ 18360907 (+)
rdh8b LOC108258824,LOC108258753 other upstream 6405 18158093 ~ 18166225 (+)
G377748 LOC108258742 other upstream 103684 18062418 ~ 18068946 (+)
G377747 NA other upstream 115825 18055624 ~ 18056805 (+)
LOC113524903 NA other upstream 167490 17983486 ~ 18005140 (+)
LOC113526395 NA other upstream 603163 17561445 ~ 17569467 (+)
G378105 LOC108258757 other downstream 107223 18282994 ~ 18287310 (+)
txndc11 txndc11 other downstream 206552 18382323 ~ 18549969 (+)
G378160 NA other downstream 319069 18494840 ~ 18496043 (+)
cdc37 cdc37 other downstream 426796 18602567 ~ 18609984 (+)
LOC113525834 LOC108258740,LOC108412431 other downstream 605267 18781038 ~ 18822056 (+)

Expression


Co-expression Network