LOC113535707 (LOC108258365,LOC108437114)


Basic Information

Item Value
gene id LOC113535707
gene name LOC108258365,LOC108437114
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1895048 ~ 1909374 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300369.1
TcacccaggtgtgtgtgagtttgatAAGAACTCTGATAAAATCCCCGTCATCTTTCCtcggggttttttttttttgcttcaagaACTTCATTCAGAGTGTTTTCCTCGACTAAAGATTGGCTAATTGTGGATAATTCAGTATTACTACGACGGGATACGAGAGCACACCTGATACACCTGGggatatttcattaaaaaacaaaaaaaaaaagATGGAGGGTGAGAAGAAGCCGATGCGGGTGCTGGTGACAGGCGGCAGCGGCCTGGTAGGGAAAGCCATAGAGCATGTGGTGAAGCAGAAAGGAGCGAGTGAAGGAGAGGAGTGGATCTTCCTCAGCTCAAAAGATGCAGACCTGACggcctGTTTTCAGCAGCATGGACGCCGTTACACAGCTGTCATTCCCACAAACATTTTTGGCCCACATGACAACTTCAGCATCGAGGACGGTCATGTTTTACCTGCACTCGTCCACAAGACCTACAAGGCAAAGAgggaCGGAACAGCTCTGGAGGTTTGGGGTAGTGGTCAAGGACTACGTCAGTTCATCTTCTCTGTAGATCTGGCTCGTCTTTGTGTGTGGGTGCTGAGAGAATACAACGAAATCGAGCCCATCATTCTCTCAGttggagaagaggaagagatgTCCATTAAAGATGTCGTTGATGTGATTGTGAAAGCTTTCGGCTTCACAGGACCTGTGATTTATGACACAAGCAAATCTGATGGTCAGCTGAAGAAAACGGCGAGTAACACTAAGCTGAGACGCTACCTTCCTAATTTTGCCTTCACTCCATTCTatacagCCGTGAAGGAGACATGTGATTGGTTTGCTGCTAACTACGACAGCGCTCGCAAATGACCGTTCTGCTCGAGCCGGAGAATGACATGCTTTCTACTCTTCATCGGTACATGGTGTTAAACCTGCTGTGAACTATCTTCTGTCAAAGTTTTATTCTTAACAATCAAGAAAAAAATTCCATCTGATCTCAGGATATCTGTTTACAAATCTGTTTTAATCAACATGCTGTGCCTTTTTAATCTGATgacaataaaaggaaaataaaattcacCTTTGGTTTGca
>XM_034300370.1
gtgttttgtgataAGAGACAAAGGTGGAATAAGACTAAGTGCAGACGAAAAGCCGCAGACGAAAATAATAAGCGTGTGTTGGTTAGGCATGCACGAGTCATTTTCATGCTCAAGGGCTCACGTTGAGATCTGCTTGTTAGAACGTGTAGACTACTAGATGGAGGGTGAGAAGAAGCCGATGCGGGTGCTGGTGACAGGCGGCAGCGGCCTGGTAGGGAAAGCCATAGAGCATGTGGTGAAGCAGAAAGGAGCGAGTGAAGGAGAGGAGTGGATCTTCCTCAGCTCAAAAGATGCAGACCTGACggcctGTTTTCAGCAGCATGGACGCCGTTACACAGCTGTCATTCCCACAAACATTTTTGGCCCACATGACAACTTCAGCATCGAGGACGGTCATGTTTTACCTGCACTCGTCCACAAGACCTACAAGGCAAAGAgggaCGGAACAGCTCTGGAGGTTTGGGGTAGTGGTCAAGGACTACGTCAGTTCATCTTCTCTGTAGATCTGGCTCGTCTTTGTGTGTGGGTGCTGAGAGAATACAACGAAATCGAGCCCATCATTCTCTCAGttggagaagaggaagagatgTCCATTAAAGATGTCGTTGATGTGATTGTGAAAGCTTTCGGCTTCACAGGACCTGTGATTTATGACACAAGCAAATCTGATGGTCAGCTGAAGAAAACGGCGAGTAACACTAAGCTGAGACGCTACCTTCCTAATTTTGCCTTCACTCCATTCTatacagCCGTGAAGGAGACATGTGATTGGTTTGCTGCTAACTACGACAGCGCTCGCAAATGACCGTTCTGCTCGAGCCGGAGAATGACATGCTTTCTACTCTTCATCGGTACATGGTGTTAAACCTGCTGTGAACTATCTTCTGTCAAAGTTTTATTCTTAACAATCAAGAAAAAAATTCCATCTGATCTCAGGATATCTGTTTACAAATCTGTTTTAATCAACATGCTGTGCCTTTTTAATCTGATgacaataaaaggaaaataaaattcacCTTTGGTTTGca
>XM_034300371.1
agaTCTTATAAGAATAAAGCGTTCTGTAATAGGAAAAGACCAATAACTCCGCATTCCTTAATTCGTCCTGAAAATGATATTATCTGATGGAGGGTGAGAAGAAGCCGATGCGGGTGCTGGTGACAGGCGGCAGCGGCCTGGTAGGGAAAGCCATAGAGCATGTGGTGAAGCAGAAAGGAGCGAGTGAAGGAGAGGAGTGGATCTTCCTCAGCTCAAAAGATGCAGACCTGACggcctGTTTTCAGCAGCATGGACGCCGTTACACAGCTGTCATTCCCACAAACATTTTTGGCCCACATGACAACTTCAGCATCGAGGACGGTCATGTTTTACCTGCACTCGTCCACAAGACCTACAAGGCAAAGAgggaCGGAACAGCTCTGGAGGTTTGGGGTAGTGGTCAAGGACTACGTCAGTTCATCTTCTCTGTAGATCTGGCTCGTCTTTGTGTGTGGGTGCTGAGAGAATACAACGAAATCGAGCCCATCATTCTCTCAGttggagaagaggaagagatgTCCATTAAAGATGTCGTTGATGTGATTGTGAAAGCTTTCGGCTTCACAGGACCTGTGATTTATGACACAAGCAAATCTGATGGTCAGCTGAAGAAAACGGCGAGTAACACTAAGCTGAGACGCTACCTTCCTAATTTTGCCTTCACTCCATTCTatacagCCGTGAAGGAGACATGTGATTGGTTTGCTGCTAACTACGACAGCGCTCGCAAATGACCGTTCTGCTCGAGCCGGAGAATGACATGCTTTCTACTCTTCATCGGTACATGGTGTTAAACCTGCTGTGAACTATCTTCTGTCAAAGTTTTATTCTTAACAATCAAGAAAAAAATTCCATCTGATCTCAGGATATCTGTTTACAAATCTGTTTTAATCAACATGCTGTGCCTTTTTAATCTGATgacaataaaaggaaaataaaattcacCTTTGGTTTGca
>XM_034300372.1
AGCCATAGAGCATGTGGTGAAGCAGAAAGGAGCGAGTGAAGGAGAGGAGTGGATCTTCCTCAGCTCAAAAGATGCAGACCTGACATCCATAATGGTCCTCCTCATGAGTCGAACTCGGGTTATGCCTACGCCAAGAGGATGATTGACGTACACAACAGggcctGTTTTCAGCAGCATGGACGCCGTTACACAGCTGTCATTCCCACAAACATTTTTGGCCCACATGACAACTTCAGCATCGAGGACGGTCATGTTTTACCTGCACTCGTCCACAAGACCTACAAGGCAAAGAgggaCGGAACAGCTCTGGAGGTTTGGGGTAGTGGTCAAGGACTACGTCAGTTCATCTTCTCTGTAGATCTGGCTCGTCTTTGTGTGTGGGTGCTGAGAGAATACAACGAAATCGAGCCCATCATTCTCTCAGttggagaagaggaagagatgTCCATTAAAGATGTCGTTGATGTGATTGTGAAAGCTTTCGGCTTCACAGGACCTGTGATTTATGACACAAGCAAATCTGATGGTCAGCTGAAGAAAACGGCGAGTAACACTAAGCTGAGACGCTACCTTCCTAATTTTGCCTTCACTCCATTCTatacagCCGTGAAGGAGACATGTGATTGGTTTGCTGCTAACTACGACAGCGCTCGCAAATGACCGTTCTGCTCGAGCCGGAGAATGACATGCTTTCTACTCTTCATCGGTACATGGTGTTAAACCTGCTGTGAACTATCTTCTGTCAAAGTTTTATTCTTAACAATCAAGAAAAAAATTCCATCTGATCTCAGGATATCTGTTTACAAATCTGTTTTAATCAACATGCTGTGCCTTTTTAATCTGATgacaataaaaggaaaataaaattcacCTTTGGTTTGca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300369.1 True 1083 mRNA 0.44 7 1895048 1906506
XM_034300370.1 False 1028 mRNA 0.46 8 1895048 1909374
XM_034300371.1 False 957 mRNA 0.45 7 1895048 1908127
XM_034300372.1 False 883 mRNA 0.45 7 1895048 1902079

Neighbor

gene id symbol gene type direction distance location
pard3ba pard3b coding downstream 156113 1618820 ~ 1738935 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding downstream 376677 1512321 ~ 1518371 (-)
LOC113535431 LOC108258373 coding downstream 529142 1355723 ~ 1365906 (-)
slc5a10 slc5a10 coding downstream 649007 1204764 ~ 1246041 (-)
LOC113535776 LOC108258401 coding downstream 704500 1167628 ~ 1190548 (-)
klf7a LOC108258322 coding upstream 6289 1915663 ~ 1937075 (-)
LOC117596168 NA coding upstream 347047 2256421 ~ 2259148 (-)
LOC113535651 NA coding upstream 351915 2261289 ~ 2271653 (-)
LOC113535598 LOC108258873 coding upstream 373417 2282791 ~ 2331670 (-)
LOC113535761 NA coding upstream 437854 2347228 ~ 2350989 (-)
G369641 NA non-coding downstream 5674 1888504 ~ 1889374 (-)
G369618 NA non-coding downstream 40395 1854440 ~ 1854653 (-)
G369617 NA non-coding downstream 41266 1853349 ~ 1853782 (-)
G369573 NA non-coding downstream 71544 1785553 ~ 1823504 (-)
G369596 NA non-coding downstream 89746 1803109 ~ 1805302 (-)
G369663 NA non-coding upstream 109341 2018715 ~ 2021315 (-)
LOC117596194 NA non-coding upstream 206204 2115578 ~ 2144451 (-)
LOC117596130 NA non-coding upstream 277272 2186646 ~ 2187942 (-)
LOC117596129 NA non-coding upstream 289651 2199025 ~ 2245158 (-)
LOC113535806 NA non-coding upstream 433739 2343113 ~ 2345533 (-)
mdh1b mdh1b other downstream 62319 1824204 ~ 1832729 (-)
G369586 NA other downstream 99824 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 283382 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 618235 1276021 ~ 1276813 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 946245 869759 ~ 948803 (-)
LOC113535702 mx1 other upstream 657383 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 933838 2843212 ~ 2853211 (-)
G370658 NA other upstream 2933955 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 3479530 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 3620618 5529992 ~ 5547032 (-)

Expression


Co-expression Network