dcaf15 (dcaf15,LOC106592097,LOC106594349)


Basic Information

Item Value
gene id dcaf15
gene name dcaf15,LOC106592097,LOC106594349
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15104177 ~ 15113293 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300392.1
GGTGGGATGGACTGTGGGCACGTCCGTAGATTTTTTTCgcaaaaggaaaaaatggcGCCCAGCTCGAAATCGGAAAAAGAAGACAAcagcaacaaacaaaaacagcagcgAAAACACAAAGACCACATTGTCAAACTCCTCACTCGCGGAAAGctGTCCGGCCAGCTGTCTCAGAGACTGTTCCGCAAGCTGCCGCCCCGAGTGTGTGTCCCCTTAAAGACTATAGTGAGCGAGGAGTTCCTCCGGGCTGGTCACATCTTCCTGGGCTTTACAAAGTGCGGCCGTTACGTTTTGTCCTACACGAGCGATTGTGGTGAGGATGATGATTTCTCCTTCTACACCTACCATCTGTACTGGTGGGAGTTCAACCTGCACAGTCGCCTCAAACAGGTGCATCATGTGCGTTTGTTTGCGGGTGAAGACATCTACAGTGAGCTGTACCTGACCGTCTGCGAGTGGCACAATGATCACTCAAAGATCGTCATCTTCGGCTTCAAtactcGCAGCAGCACGGCTCTGATGAACatgatgatgagtgatgagaATAACAGAGACATTTACATCACTATCGCCTCCATGCCTCCTGCACAGCGGTGCCAACAGTGCTGCCCTCTGCCCACTACATCCACTATacgcacaggaggggAGTGTCTGGAGCACGGCTATGTCCTGAACGCTCGTTATCAGGTGGTTTATCCGTTCCCCACCTTCCAGCCGGCTCTGCAGCTGAAGAAGGATCAGGTCATCCTCCTCAACACCAGCTACTCACTGGTGGCCTGCGCCATCTCACTCTGCTCTGGTGGAGAGCAGCAGCAAGCGGACGAACAGAATAATCAAATCCTGTACCGAAAAAGAGAGACTCCTGCTTCCTCCTCTCATCATCCTCCCAGCCCATccacctcctcttcctcctcctcctcctcctcctcttcttcctcctctcatGGGTCACCTGACCGCAGACCGACCAATCCCCACACGACGCCGCTCTCTCCCAGCCGATCCCAGGCTGCCGTAAGAGCACGCGAGTTCGCCGCTGACATCTTCCGGCGTGCGCAGGCAGGGACGGACGGAGACGGTGAGCGGCGAAGGAAGGATGGAGAAGCCAGAGAGGTGAAAATCTCACGCACATCCGCCACAGACTCAGAACGAAGGAGAGCAGAAGAAAGAAGGGAGGACACAGAGGGACCGTCCACTTCACACGGGAAAGGAAGTACCCCGTCGTCCAATGAGCCGGAGGACAGCGTCTCGTGTAACACGGTCATGTCCCCAGCGTCCACGTCCTCTTTGTGCTCGCTTTCGCCGCACGCCGCGGCGTCATCGTCCACGTCAGAGCCGGGATACGTGAACTACACACAACTCAGATACAGGCTGCAGCAGCCCGGGACGACAGAGCAGGACAGcggagaagaggaggataAAGTTCAGCTGCCGTTCACCGTCTCGGACCTGAAGGGAAGAAACCTGCAGCTGGTGACGGGACAGTACACGGGActgtgtgtgtgtgtggagcagctGACCCTGGATTTTGAGTATCTGATTAATGAGGTGATCAGAAACGATGCAGAGTGGGCCTCCCAGTTCTGCTCCTTCAGCGACTATGACGTCGTAATccttgagGTTTGCCCAGAGACAAATATAGTAGTGATAAACATCGGACTTCTGCTGCTGGCCTTCTCCAACTGTGAGGAGGAGCacagcaggcCTAAGTCGTATCACTCCAGTCTGCAGGTCAGCTGGGATCTGAACACGGGCGCCTGCTGCACCGTCGGTGTCGGTGACCTCACCGAGGTCAAAGGGCAAACCAGTGGGAGTGTGTGGAGTTCTTACAGGAAGTCGTGTGTAAACACAGTCATGAGGTGGCTCGTCCCTGAGAGCAGCTCGCGCTACATCAACCGCATGACCAATGAAGCCCTGCACAAAGGTACCTCTCTTCAAGTACTTGCTGACAGCGACAGAGCCACGTGGATCGTCCTGTAATGAAGACACCATagcactcagacacacacacacacacacacacacatatacaggcGGAGCGGTTTTTTCTCTCAGTCCGCACTTTGTATTCAGAAATTCAGATGTGGAGCGAAAGCCTCGACTGTGAGTCCAGTGAGCCATACATGCTGCTGCTGCACTAAGATCTTTCAGACTCTCTGCTGGAACGAACAAAGCATCTCTAATGCACCGTCATTTatacatgtcttttttttgttgttgtttttgttgttgtgtatgtgattgATCCTTTCGTATGCATGGTTCAACTAATTTAACTGCTTAACCTAGTGTCAGTATCGATCAGGGACAGGTTTATCTCTCGAACCCTCTGCcatgaggtgtgtgtttttctatccagatctaacacacctgatgtcCTGAAGATGGTGCTTTAACCCGGATCGGTTTGGTCGCTTTGGATTTTGGTCAGATTATCCGCAAGTGACCAGTGACTGAGTTAGAGGCTCATCGGCCAAATCTGACCTCAGGACCTCAAATTCAGATGAATTCTAAATGGTGAAACTGGCCTCGGGTTTACACGATTCGAGCTTAACAAACACAAAGCTTTAGTCAAACATGCTTCTAACTTTTGTAAAGTTATTTTCCCCATCACACAGTGTTCTTCtcagcatttattatttatctattaaCACAATGTCATCTAGTTTTAGAGCGGTAAAATGAATTCTGGACCTGAAAAGCTGTAAAACAAACAATCTGTTTACTCTCCAGCTTGTTGGTTTGAGGTGCAGTCGGATGCCATCCTTTCCAGCATCCATTCCAGATCTGCACATTTTTCGTTATTCCTCTGCTGGGGTAATCATCAGTCCATTAGACAAGTTCATTCATTTTAtgagaaaacactaaaacatgcTGAAATTAAGGACCACTATTCTGAACATCttcacagatttgttttgagCTCTTAAGAACTGTAAGTATACCTGTAAACATGTTGGGGAAAATGGTCTTGGGCATTGCAGGGTTGATTGTGAGTGACGTCCTCTTCTCGTCCATGAACTCATGTAGATGCTGCTGCAGGCTACACCGGGGACGTGTGTGTCGTGTGTTGCGGCATTTCCGCAATGAAATATTGTAActgctcatttaaaatgtgcagAATCTCGGCCCATAACGTTACATCGATCCactctgttgttttgtttattttgttttgttttgtttttttcttttctaagtTGTGGTCATGATGCACCTCTACAGAATATGAACAATACTTGATATTGTCTTtacttgattattttttaataaaaactaataattcTAAAGGT
>XM_034300393.1
CCTCACTCGCGGAAAGGTGTTAAAGCGATTTATTTTCTCAGCGTGTAAACTGCCGTTGTTTAACGGCGAAGGGTTTAAACGATGGAATTAAATGCActGTCCGGCCAGCTGTCTCAGAGACTGTTCCGCAAGCTGCCGCCCCGAGTGTGTGTCCCCTTAAAGACTATAGTGAGCGAGGAGTTCCTCCGGGCTGGTCACATCTTCCTGGGCTTTACAAAGTGCGGCCGTTACGTTTTGTCCTACACGAGCGATTGTGGTGAGGATGATGATTTCTCCTTCTACACCTACCATCTGTACTGGTGGGAGTTCAACCTGCACAGTCGCCTCAAACAGGTGCATCATGTGCGTTTGTTTGCGGGTGAAGACATCTACAGTGAGCTGTACCTGACCGTCTGCGAGTGGCACAATGATCACTCAAAGATCGTCATCTTCGGCTTCAAtactcGCAGCAGCACGGCTCTGATGAACatgatgatgagtgatgagaATAACAGAGACATTTACATCACTATCGCCTCCATGCCTCCTGCACAGCGGTGCCAACAGTGCTGCCCTCTGCCCACTACATCCACTATacgcacaggaggggAGTGTCTGGAGCACGGCTATGTCCTGAACGCTCGTTATCAGGTGGTTTATCCGTTCCCCACCTTCCAGCCGGCTCTGCAGCTGAAGAAGGATCAGGTCATCCTCCTCAACACCAGCTACTCACTGGTGGCCTGCGCCATCTCACTCTGCTCTGGTGGAGAGCAGCAGCAAGCGGACGAACAGAATAATCAAATCCTGTACCGAAAAAGAGAGACTCCTGCTTCCTCCTCTCATCATCCTCCCAGCCCATccacctcctcttcctcctcctcctcctcctcctcttcttcctcctctcatGGGTCACCTGACCGCAGACCGACCAATCCCCACACGACGCCGCTCTCTCCCAGCCGATCCCAGGCTGCCGTAAGAGCACGCGAGTTCGCCGCTGACATCTTCCGGCGTGCGCAGGCAGGGACGGACGGAGACGGTGAGCGGCGAAGGAAGGATGGAGAAGCCAGAGAGGTGAAAATCTCACGCACATCCGCCACAGACTCAGAACGAAGGAGAGCAGAAGAAAGAAGGGAGGACACAGAGGGACCGTCCACTTCACACGGGAAAGGAAGTACCCCGTCGTCCAATGAGCCGGAGGACAGCGTCTCGTGTAACACGGTCATGTCCCCAGCGTCCACGTCCTCTTTGTGCTCGCTTTCGCCGCACGCCGCGGCGTCATCGTCCACGTCAGAGCCGGGATACGTGAACTACACACAACTCAGATACAGGCTGCAGCAGCCCGGGACGACAGAGCAGGACAGcggagaagaggaggataAAGTTCAGCTGCCGTTCACCGTCTCGGACCTGAAGGGAAGAAACCTGCAGCTGGTGACGGGACAGTACACGGGActgtgtgtgtgtgtggagcagctGACCCTGGATTTTGAGTATCTGATTAATGAGGTGATCAGAAACGATGCAGAGTGGGCCTCCCAGTTCTGCTCCTTCAGCGACTATGACGTCGTAATccttgagGTTTGCCCAGAGACAAATATAGTAGTGATAAACATCGGACTTCTGCTGCTGGCCTTCTCCAACTGTGAGGAGGAGCacagcaggcCTAAGTCGTATCACTCCAGTCTGCAGGTCAGCTGGGATCTGAACACGGGCGCCTGCTGCACCGTCGGTGTCGGTGACCTCACCGAGGTCAAAGGGCAAACCAGTGGGAGTGTGTGGAGTTCTTACAGGAAGTCGTGTGTAAACACAGTCATGAGGTGGCTCGTCCCTGAGAGCAGCTCGCGCTACATCAACCGCATGACCAATGAAGCCCTGCACAAAGGTACCTCTCTTCAAGTACTTGCTGACAGCGACAGAGCCACGTGGATCGTCCTGTAATGAAGACACCATagcactcagacacacacacacacacacacacacatatacaggcGGAGCGGTTTTTTCTCTCAGTCCGCACTTTGTATTCAGAAATTCAGATGTGGAGCGAAAGCCTCGACTGTGAGTCCAGTGAGCCATACATGCTGCTGCTGCACTAAGATCTTTCAGACTCTCTGCTGGAACGAACAAAGCATCTCTAATGCACCGTCATTTatacatgtcttttttttgttgttgtttttgttgttgtgtatgtgattgATCCTTTCGTATGCATGGTTCAACTAATTTAACTGCTTAACCTAGTGTCAGTATCGATCAGGGACAGGTTTATCTCTCGAACCCTCTGCcatgaggtgtgtgtttttctatccagatctaacacacctgatgtcCTGAAGATGGTGCTTTAACCCGGATCGGTTTGGTCGCTTTGGATTTTGGTCAGATTATCCGCAAGTGACCAGTGACTGAGTTAGAGGCTCATCGGCCAAATCTGACCTCAGGACCTCAAATTCAGATGAATTCTAAATGGTGAAACTGGCCTCGGGTTTACACGATTCGAGCTTAACAAACACAAAGCTTTAGTCAAACATGCTTCTAACTTTTGTAAAGTTATTTTCCCCATCACACAGTGTTCTTCtcagcatttattatttatctattaaCACAATGTCATCTAGTTTTAGAGCGGTAAAATGAATTCTGGACCTGAAAAGCTGTAAAACAAACAATCTGTTTACTCTCCAGCTTGTTGGTTTGAGGTGCAGTCGGATGCCATCCTTTCCAGCATCCATTCCAGATCTGCACATTTTTCGTTATTCCTCTGCTGGGGTAATCATCAGTCCATTAGACAAGTTCATTCATTTTAtgagaaaacactaaaacatgcTGAAATTAAGGACCACTATTCTGAACATCttcacagatttgttttgagCTCTTAAGAACTGTAAGTATACCTGTAAACATGTTGGGGAAAATGGTCTTGGGCATTGCAGGGTTGATTGTGAGTGACGTCCTCTTCTCGTCCATGAACTCATGTAGATGCTGCTGCAGGCTACACCGGGGACGTGTGTGTCGTGTGTTGCGGCATTTCCGCAATGAAATATTGTAActgctcatttaaaatgtgcagAATCTCGGCCCATAACGTTACATCGATCCactctgttgttttgtttattttgttttgttttgtttttttcttttctaagtTGTGGTCATGATGCACCTCTACAGAATATGAACAATACTTGATATTGTCTTtacttgattattttttaataaaaactaataattcTAAAGGT

Function

symbol description
dcaf15 Predicted to be involved in protein ubiquitination. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DCAF15 (DDB1 and CUL4 associated factor 15).

NR:

description
PREDICTED: DDB1- and CUL4-associated factor 15

GO: NA

KEGG:

id description
K11791 DCAF15; DDB1- and CUL4-associated factor 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300392.1 True 3293 mRNA 0.49 13 15104177 15113293
XM_034300393.1 False 3236 mRNA 0.49 13 15104177 15113156

Neighbor

gene id symbol gene type direction distance location
rln3b rln3 coding downstream 26561 15074671 ~ 15077616 (-)
spast spast coding downstream 31832 15060921 ~ 15072345 (-)
LOC113537617 NA coding downstream 145976 14953561 ~ 14958201 (-)
cct4 cct4,LOC107700877,LOC107594293 coding downstream 206035 14890222 ~ 14898142 (-)
fam161a fam161a coding downstream 215268 14880246 ~ 14888909 (-)
dla LOC108258338,LOC103023774,LOC108438608,LOC107746130,LOC107703728,LOC107598533,LOC107700799,LOC107594356 coding upstream 22940 15136233 ~ 15142801 (-)
ccsapa LOC108258518 coding upstream 59445 15172738 ~ 15180828 (-)
acta1a acta1,LOC102689871,LOC108414322,LOC108430668,LOC103383882 coding upstream 68340 15181633 ~ 15186072 (-)
nup133 nup133,LOC107700801,LOC107729904,LOC107746127,LOC106958119,LOC106908639,LOC107729676 coding upstream 78012 15191305 ~ 15208140 (-)
ndufaf5 ndufaf5,LOC107684300,LOC107583196,LOC107594415 coding upstream 123567 15236860 ~ 15243012 (-)
G376602 NA non-coding downstream 3165 15099016 ~ 15101012 (-)
G376574 NA non-coding downstream 58818 15044712 ~ 15045359 (-)
G376364 NA non-coding downstream 68711 15035165 ~ 15035466 (-)
G376171 NA non-coding downstream 364370 14739369 ~ 14739807 (-)
G376127 taf5l non-coding downstream 442866 14657946 ~ 14661311 (-)
G376608 LOC108259073 non-coding upstream 18724 15132017 ~ 15132290 (-)
G376613 NA non-coding upstream 34492 15147785 ~ 15147985 (-)
G376615 NA non-coding upstream 39599 15152892 ~ 15153120 (-)
LOC117596121 NA non-coding upstream 44853 15158146 ~ 15158646 (-)
G376671 jag1 non-coding upstream 284375 15397668 ~ 15401270 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 143125 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 354443 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 391531 14697239 ~ 14712646 (-)
G376143 NA other downstream 419849 14682387 ~ 14684328 (-)
meis1a meis1 other downstream 579661 14460283 ~ 14524516 (-)
triobpa LOC108259073 other upstream 4219 15117512 ~ 15129256 (-)
dpy30 dpy30,LOC107684266 other upstream 299131 15412424 ~ 15458205 (-)
G376956 NA other upstream 804335 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 816460 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 850583 15963876 ~ 15984959 (-)

Expression


Co-expression Network