LOC113535779 (cacng3,LOC108258515,LOC108439097)


Basic Information

Item Value
gene id LOC113535779
gene name cacng3,LOC108258515,LOC108439097
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 645476 ~ 651428 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300403.1
ATGAGGCCGTGCAACCGTGGAGCACAGATGCTCATCACTACAGCTGGAGCTTTTGCTGCTTTCAGCCTCATGACCATCGCAGTAGGAACGGATTATTGGCTTTACTCGCCCGGCGTGTGTCGCACCGAGAGCACAGGCGACAACGAGACCAGCCAGAAGAACGAAGAGGTTCTTACGCATTCGGGCCTCTGGCGTCAGTGCTGCATGGAAGgtctgttcacaggtgtgtgtaaaaacattgATCATTTCCCAGAAGACGGTGAATATGAACAAGATGCAGCAGAATACTTGCTCCgagcaGTACGCGCCTCCAGTCTTTTCCCCATCATGAGTGTTGGGTTGCTGTTTGTTGGTGGAGTTTGTGTCGCCGCCAGTGAGTTCTACAAAAACCGCCACAACGTCATCCTGAGCGCAGGAATATTCTTCGTCTCCGCCGgGCTCAGTAACATCATCGGGATCATTGTGTACATTTCCGCCAACGCCGGAGATCCGAATCAGAGCGAGTCGAAGCGGAGTCACCGGTACGGCTGGAGCTTCTACTGCGGCGCGCTCTCCTTCATCATGGCGGAGACGGTGGGCGCGCTCACGGTGCACCTGTTCATCGACTCGCACCGCACGCGCACCTTCCGCCGCGCGCCCCGGAACCGCGTGCACGCGTCGCTCCAGAGCCGCCGCTCCTCCAGCTACCGCTCGCGCTACCGCGGCCACGCGCACGCGCACGCGCTCCTGCGCTCGCCAGGCGCCGGCCGCCCGAGCAACGACGAGGTCGCGCTCCGTTCGCTCCGTTACGCGCCGGCCACGCCCCTTCATCAAACCGCGCACGCGCCCTACATCAAAGCGGAGAACGGGCTCGCCTTTCACGCGCACAGCCACGGCGCGCATCACGAGGAGCAGAACTCAGGCGCGCTCACGCCGAAGAAAAAATGCGCGCTCCCGACTCTGAGCAGCAGCAGCGCCGCCACGAGGAGAACAACACCGGTGTGA

Function

symbol description
cacng3 Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; postsynaptic neurotransmitter receptor diffusion trapping; and protein transport. Predicted to be located in somatodendritic compartment. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse and postsynaptic density membrane. Predicted to be integral component of postsynaptic density membrane. Implicated in childhood absence epilepsy and macular degeneration.

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300403.1 True 984 mRNA 0.61 4 645476 651428

Neighbor

gene id symbol gene type direction distance location
plk1 plk1,LOC107722962,LOC107702528 coding downstream 56080 582498 ~ 589396 (-)
chtf18 chtf18,LOC107725360 coding downstream 87264 544258 ~ 558212 (-)
uncx4.1 LOC108258667 coding downstream 120411 518604 ~ 525065 (-)
elfn1b elfn1b,LOC108258545,LOC108439159,LOC107722936,LOC107590768,LOC107702506,LOC107714143 coding downstream 237187 352453 ~ 408289 (-)
rgs11 rgs11 coding downstream 367793 262153 ~ 277683 (-)
tlr2 tlr2 coding upstream 51771 703199 ~ 711315 (-)
fscn1b LOC108258690 coding upstream 245796 897224 ~ 902489 (-)
smcr8b LOC108258855 coding upstream 312427 963855 ~ 969617 (-)
mief2 mief2,LOC108258856,LOC107722977,LOC107725398 coding upstream 319364 970792 ~ 979232 (-)
alkbh5 alkbh5 coding upstream 329442 980870 ~ 986570 (-)
G368903 NA non-coding downstream 63616 578593 ~ 581860 (-)
G368725 NA non-coding downstream 363573 281439 ~ 281903 (-)
G368713 NA non-coding downstream 400696 244177 ~ 244780 (-)
G368689 NA non-coding downstream 451562 185834 ~ 193914 (-)
G368685 NA non-coding downstream 460830 179182 ~ 184646 (-)
G368912 NA non-coding upstream 20212 671640 ~ 673030 (-)
G368944 NA non-coding upstream 49656 701084 ~ 701288 (-)
G369130 NA non-coding upstream 220161 871589 ~ 875203 (-)
LOC117596193 NA non-coding upstream 615278 1266706 ~ 1270425 (-)
G369243 LOC108258881,LOC108261507 non-coding upstream 625645 1277073 ~ 1277650 (-)
rasd3 LOC108258668 other downstream 52881 591136 ~ 592595 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other downstream 355568 284863 ~ 289908 (-)
si:dkeyp-75b4.8 NA other downstream 418374 202654 ~ 227102 (-)
prkcba prkcb other upstream 2025 653453 ~ 702345 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other upstream 218331 869759 ~ 948803 (-)
G369125 actb other upstream 260125 911553 ~ 915683 (-)
G369242 LOC108258881 other upstream 624593 1276021 ~ 1276813 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other upstream 887025 1538453 ~ 1611666 (-)

Expression


Co-expression Network