LOC117596190 (gtf3c1)


Basic Information

Item Value
gene id LOC117596190
gene name gtf3c1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18385927 ~ 18390650 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300413.1
cacacacactccctgttcACACAGAgcgacagcgCAGTGTTCTccactccctctctcccctcctcCGTCTCTCGTATGATTGACCGGCGGCGTgtgtgtgggcggagcttcttGGAGGAATGCGTGTCCCTGTTGGGTTACAGCCGTGAGGACGTGGAGGCGGTGCAGGAGGTCATGGTCGCTGTGGAAACGGGGGAGGAGTTTGGCATCAACCTGCAGGACTTGTACAGGAAATGCACACACCTGGAACAGGTGGAGAAGGGGCGGAGCAAAACGCTGCAGCAGTACATCCAGgatctGTTAGACTGTGAGAAGGTGTTGGAGGTGGGCGCTCTCTCTCCACGCTTGGTCTGCATGGACTTCGCTGTTCCGTGGCTGCTGCAGTGCCCCAAAGTGTCTGAAGAGCCATGTCCCTCCCACAAGATGCCCCACCCACCACCACTGACATCACTCCCGAAGCTCCGCCCTCCTCCTCAGATGTCACCGCTGAAGCACTGCCTACTTCACACAAGCCACCACTAAAGAGACTGTTAGATCAGACAgacggtgatgatgatgatgttgatgtagTCCCTCCTGTCAAGAGACCCACCATGGAGACTGTTGCTATGGAGACGGGGGAATCCAGTGCAGAAGAGGGCAGGGTTAAAACTTCTCTTCCGGATCCACCCTCTTCTGATAAACAGGAAGTGGCGCACAGTGATGATGCGTCGGCTTTGCGCAAGTGTGACGGTTTAATTAAGGAGGAAAACGTGACACAGAcccaaggTGGAGAGAATGCTGAGATctcagaggaggaggatgtgttgaGCTTCGTAGCTCGTCCGTGGCGTGTCGTGGATGGGTCTCTGAACAGGCCTGTGTGTAAGGGGATGTTAGAGGCACTGCTGTTACACATCATGACACACCCTGGTGTTCCTGAACCGGCActgctgcagcattacagcGGAGTTCTGCAGCCCATGGTCATCCTGGATCTGctaaaggtTCTTGAAGAGTTGGGGTGTGTAATAAAGCGTTTTACAGTTAATCGCCCCAAAGCGTCTCTGTTTTCTCGCTCTGGCATTCccaaggtcaaaggtcacggAGAGGTCAGTGTGATGGAGGATGTGGTGGCGTTTTACGAGCCCACGGTGGACTGCAGTTTAAGAATCTCTAAGCTCTTCCCTCATGAGTCTAGCTGGAACAGATGGGTACAGCTGTGTGcacgctgaacacacacacacacacacacacacacacacactcacactcatgtccaaaattagtgtttttatttaacttaattgcGGCTATAATTAAAGCTATTTGTGATTTCTgtgcaaaatgaataaagagagttttatttgtt
>XM_034300414.1
cacacacacacactccctgttcACACAGAgcgacagcgCAGTGTTCTccactccctctctcccctcctcCGTCTCTCGTATGATTGACCGGCGGCGTgtgtgtgggcggagcttcttGGAGGAATGCGTGTCCCTGTTGGGTTACAGCCGTGAGGACGTGGAGGCGGTGCAGGAGGTCATGGTCGCTGTGGAAACGGGGGAGGAGTTTGGCATCAACCTGCAGGACTTGTACAGGAAATGCACACACCTGGAACAGGTGGAGAAGGGGCGGAGCAAAACGCTGCAGCAGTACATCCAGgatctGTTAGACTGTGAGAAGGTGTTGGAGGTGGGCGCTCTCTCTCCACGCTTGGTCTGCATGGACTTCGCTGTTCCGTGGCTGCTGCAGTGCCCCAAAGTGTCTGAAGAGCCATGTCCCTCCCACAAGATGCCCCACCCACCACCACTGACATCACTCCCGAAGCTCCGCCCTCCTCCTCAGATGTCACCGCTGAAGCACTGCCTACTTCACACAAGCCACCACTAAAGAGACTGTTAGATCAGACAgacggtgatgatgatgatgttgatgtagTCCCTCCTGTCAAGAGACCCACCATGGAGACTGTTGCTATGGAGACGGGGGAATCCAGTGCAGAAGAGGGCAGGGTTAAAACTTCTCTTCCGGATCCACCCTCTTCTGATAAACAGGAAGTGGCGCACAGTGATGATGCGTCGGCTTTGCGCAAGTGTGACGGTTTAATTAAGGAGGAAAACGTGACACAGAcccaaggTGGAGAGAATGCTGAGATctcagaggaggaggatgtgttgaGCTTCGTAGCTCGTCCGTGGCGTGTCGTGGATGGGTCTCTGAACAGGCCTGTGTGTAAGGGGATGTTAGAGGCACTGCTGTTACACATCATGACACACCCTGGTGTTCCTGAACCGGCActgctgcagcattacagcGGAGTTCTGCAGCCCATGGTCATCCTGGATCTGctaaaggtTCTTGAAGAGTTGGGGTGTGTAATAAAGCGTTTTACAGTTAATCGCCCCAAAGCGTCTCTGTTTTCTCGCTCTGGCATTCccaaggtcaaaggtcacggAGAGGTCAGTGTGATGGAGGATGTGGTGGCGTTTTACGAGCCCACGGTGGACTGCAGTTTAAGAATCTCTAAGCTCTTCCCTCATGAGTCTAGCTGGAACAGATGGGTACAGCTGTGTGcacgctgaacacacacacacacacacacacacacacacactcacactcatgtccaaaattagtgtttttatttaacttaattgcGGCTATAATTAAAGCTATTTGTGATTTCTgtgcaaaatgaataaagagagttttatttgtt
>XM_034300415.1
ccctgttcACACAGAGCGacagcgCAGTGTTCTccactccctctctcccctcctcCGTCTCTCGTATGATTGACCGGCGGCGTgtgtgtgggcggagcttcttGGAGGAATGCGTGTCCCTGTTGGGTTACAGCCGTGAGGACGTGGAGGCGGTGCAGGAGGTCATGGTCGCTGTGGAAACGGGGGAGGAGTTTGGCATCAACCTGCAGGACTTGTACAGGAAATGCACACACCTGGAACAGGTGGAGAAGGGGCGGAGCAAAACGCTGCAGCAGTACATCCAGgatctGTTAGACTGTGAGAAGGTGTTGGAGGTGGGCGCTCTCTCTCCACGCTTGGTCTGCATGGACTTCGCTGTTCCGTGGCTGCTGCAGTGCCCCAAAGTGTCTGAAGAGCCATGTCCCTCCCACAAGATGCCCCACCCACCACCACTGACATCACTCCCGAAGCTCCGCCCTCCTCCTCAGATGTCACCGCTGAAGCACTGCCTACTTCACACAAGCCACCACTAAAGAGACTGTTAGATCAGACAgacggtgatgatgatgatgttgatgtagTCCCTCCTGTCAAGAGACCCACCATGGAGACTGTTGCTATGGAGACGGGGGAATCCAGTGCAGAAGAGGGCAGGGTTAAAACTTCTCTTCCGGATCCACCCTCTTCTGATAAACAGGAAGTGGCGCACAGTGATGATGCGTCGGCTTTGCGCAAGTGTGACGGTTTAATTAAGGAGGAAAACGTGACACAGAcccaaggTGGAGAGAATGCTGAGATctcagaggaggaggatgtgttgaGCTTCGTAGCTCGTCCGTGGCGTGTCGTGGATGGGTCTCTGAACAGGCCTGTGTGTAAGGGGATGTTAGAGGCACTGCTGTTACACATCATGACACACCCTGGTGTTCCTGAACCGGCActgctgcagcattacagcGGAGTTCTGCAGCCCATGGTCATCCTGGATCTGctaaaggtTCTTGAAGAGTTGGGGTGTGTAATAAAGCGTTTTACAGTTAATCGCCCCAAAGCGTCTCTGTTTTCTCGCTCTGGCATTCccaaggtcaaaggtcacggAGAGGTCAGTGTGATGGAGGATGTGGTGGCGTTTTACGAGCCCACGGTGGACTGCAGTTTAAGAATCTCTAAGCTCTTCCCTCATGAGTCTAGCTGGAACAGATGGGTACAGCTGTGTGcacgctgaacacacacacacacacacacacacacacacactcacactcatgtccaaaattagtgtttttatttaacttaattgcGGCTATAATTAAAGCTATTTGTGATTTCTgtgcaaaatgaataaagagagttttatttgtt

Function

symbol description
gtf3c1 Predicted to contribute to DNA binding activity. Predicted to be involved in 5S class rRNA transcription by RNA polymerase III and transcription initiation from RNA polymerase III promoter. Located in nucleolus and nucleoplasm. Part of transcription factor TFIIIC complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300413.1 False 1351 mRNA 0.52 6 18385927 18390650
XM_034300414.1 True 1355 mRNA 0.52 6 18386042 18390650
XM_034300415.1 False 1341 mRNA 0.52 6 18386005 18390650

Neighbor

gene id symbol gene type direction distance location
LOC113524838 bfar coding upstream 10522 18369044 ~ 18375405 (+)
parn parn,LOC108258427 coding upstream 76875 18293758 ~ 18309052 (+)
LOC113524897 LOC108258756 coding upstream 210156 18172630 ~ 18175771 (+)
trnak-uuu_20 NA coding upstream 266190 18119665 ~ 18119737 (+)
soul5l LOC108258805,LOC108413119,LOC102292725,LOC102194468,LOC103383259 coding upstream 433749 17941545 ~ 17952178 (+)
LOC113524839 NA coding downstream 108338 18498988 ~ 18504740 (+)
LOC117596189 NA coding downstream 132511 18523161 ~ 18527596 (+)
sp6 LOC108258788,LOC108418435,LOC108418467 coding downstream 273437 18664087 ~ 18674601 (+)
LOC113524847 LOC108258823 coding downstream 643861 19034511 ~ 19105679 (+)
LOC113525760 zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398 coding downstream 735184 19125834 ~ 19139249 (+)
G378118 NA non-coding upstream 25020 18358478 ~ 18360907 (+)
G378136 NA non-coding upstream 34116 18342233 ~ 18351811 (+)
G378129 NA non-coding upstream 57754 18327771 ~ 18328173 (+)
G378114 NA non-coding upstream 72575 18312034 ~ 18313352 (+)
G377813 NA non-coding upstream 179307 18204644 ~ 18206620 (+)
G378150 NA non-coding downstream 9943 18400593 ~ 18401249 (+)
G378151 NA non-coding downstream 13184 18403834 ~ 18459466 (+)
G378163 eri2 non-coding downstream 145001 18535651 ~ 18536333 (+)
G378166 NA non-coding downstream 160213 18550863 ~ 18551872 (+)
G378203 NA non-coding downstream 237828 18628478 ~ 18631582 (+)
G378105 LOC108258757 other upstream 98617 18282994 ~ 18287310 (+)
rdh8b LOC108258824,LOC108258753 other upstream 219702 18158093 ~ 18166225 (+)
G377748 LOC108258742 other upstream 316981 18062418 ~ 18068946 (+)
G377747 NA other upstream 329122 18055624 ~ 18056805 (+)
LOC113524903 NA other upstream 380787 17983486 ~ 18005140 (+)
G378160 NA other downstream 104190 18494840 ~ 18496043 (+)
cdc37 cdc37 other downstream 211917 18602567 ~ 18609984 (+)
LOC113525834 LOC108258740,LOC108412431 other downstream 390388 18781038 ~ 18822056 (+)
G378354 LOC108258755 other downstream 546850 18937500 ~ 18942328 (+)
LOC113529661 LOC108258823 other downstream 555432 18946082 ~ 19021923 (+)

Expression


Co-expression Network