LOC113535756 (LOC108258552)


Basic Information

Item Value
gene id LOC113535756
gene name LOC108258552
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2808317 ~ 2811609 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300419.1
ATGGCTGAGGCCTTTATTCCAGTAGCTCAGGATCagttcagctgtccagtgtgtCTGGATCTCCTGAAGGATCCGGTGACTATCCCCTCTGGTCACAGTTTCtgtaaggtgtgtattaatggctGCTGGGATCAGGAGGTTGAGAAGGGCATctacagctgtcctcagtgcagaGACACTTTCACTCCCAGGCCTGTTCTACACAGAAACAACATGCTggctgaagtggtggagaaaaTGAAGACTGAAGTTcaagctgcttctcctgctcactgttacgctggacctggagatgtggagtgtgatttcTGCACTGGGAGAAAACTCAAAGCCGTCAAGTCCTGTCTGATGTGTCTGACCTCCTTTTGTGAAACTCATCTTAAACCCCATCTTGAACTTCCTGCTTTGAAAAAGCACACCTTAATCGAAGCATCCTCACAACTCCAAGAGAAGATCTGCTCTCAACATAACAAACTGATAGAGATCTACTGTCGTACTGACCAAACGTGCATTTGTTCTTTGTGCATGTTGGATAATCACAAAGGCCACGATGTTGTATCACTTTCAGCAGAGATAACTGAGAAACAGCTAAAGGAGGAGCAGCTGAAATTCCAGCAGAGaatccaggagaagcagaagaaggtgcaggagctgaaacaggcTGTGAACATGATTAAGTCCCATGCTCAGACAGCAGTGGAGGACATTGAGAGGTTCTTTACTGAGATGATCAGCTTCATGGAGAAAAAGCGCTTGGAGGTGACGgagctgatcagagctcaggagaaggCTGAACTGAGTCGAGCTGAACGACTCCTGgagcaactggagcaggagatcACTGATCTTAagaggagagtcactgagctggagcagctttcacacacacacgatcacatccACTTCCTCCAGaGTTTCCAGTCTCTCTGTGTCCCTTCTGGACACGAGGATTCACCCAGCATCACTGTCCACcaacatctctcatttgatgGACTGAGGAATTCTCTCTCAGATCTGAAAAAGCGATTTGAGGAATTCTGCGAGAAGGAATTCAACAAAATCCTTCCACATGCTGCAGCAGTTCAGAAGATTTCACCATCAGAGCCAAAGAGCagagaagattttctgaaatatttccatTCTCCGACTCTGAATCCCAACACAGCACATCATAACCTTCATCTGTCTAAGAAGACCAGAGTGGTGAAATTCAGTGGGAGTGAGCAGTCGTACTCTGATCATCCAGAGAGATTTGACTACTATGTTCAGGTCttgtgtaaggagagtgtgtgtggatgctgttactgggaggtggaTTGGAGAGGTGTTGTAGACATCTCAATCTCATATAAAGAGGTCAGGAGGAAGGGACGGGATAAGGCCTGTTGGTTTGGACATAACAGTCAGTCCTGGTGCTGtacttcttcctctctctctttctatcacaATGACATTAAAACTGAGCTCGGAGCTCCATCATCCTCCagaataggagtgtatgtggatcaGAACGCAGGAAGtctgtccttctacagcgtCTCTGACACGATGAGGCTCAtccacagagtccacaccacattcactcagcctctaTACGCTGGGTTTGGGGTTTACTGGAAATCAACTGTAAGGTTGTGTGACCCAAAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300419.1 True 1650 mRNA 0.47 7 2808317 2811609

Neighbor

gene id symbol gene type direction distance location
LOC113535480 LOC108258552,LOC108258561,LOC108258559 coding downstream 4188 2797268 ~ 2804129 (-)
LOC113535758 LOC108257886 coding downstream 37660 2768629 ~ 2770657 (-)
tuba8l2 tuba8l2,LOC108411703,LOC103042625,LOC107556293,LOC107750365,LOC100708793 coding downstream 40824 2758969 ~ 2767493 (-)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding downstream 51080 2747268 ~ 2757237 (-)
atic atic,pur9 coding downstream 79622 2718057 ~ 2728695 (-)
LOC113535483 LOC108258552,LOC108258561 coding upstream 12384 2823993 ~ 2827600 (-)
LOC113535482 LOC108258552,LOC108258557,LOC108258559,LOC108258561 coding upstream 22004 2833613 ~ 2838789 (-)
LOC117596192 NA coding upstream 63299 2874908 ~ 2892085 (-)
gpc5a gpc5 coding upstream 271461 3083070 ~ 3170485 (-)
LOC113535432 slitrk5,LOC108411062,LOC107558902,LOC107730401,LOC107677853,LOC107561275,LOC107698126 coding upstream 800110 3611719 ~ 3618120 (-)
G370028 NA non-coding downstream 17641 2783272 ~ 2790676 (-)
G370023 LOC108257886,LOC108258553,LOC108258555,LOC108258552,LOC108258559,LOC108258557,LOC108262136,LOC108258561,LOC108275310,LOC108257788 non-coding downstream 18263 2771253 ~ 2790054 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding downstream 32922 2774882 ~ 2775395 (-)
G369988 NA non-coding downstream 113740 2694149 ~ 2694577 (-)
G369980 NA non-coding downstream 130047 2673555 ~ 2678270 (-)
G370019 NA non-coding upstream 6994 2818603 ~ 2821314 (-)
G370127 NA non-coding upstream 137812 2949421 ~ 2984930 (-)
LOC117596157 NA non-coding upstream 227565 3039174 ~ 3052202 (-)
G370207 NA non-coding upstream 258389 3069998 ~ 3072601 (-)
G370237 NA non-coding upstream 363535 3175144 ~ 3176945 (-)
LOC113535702 mx1 other downstream 233846 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 975588 1824204 ~ 1832729 (-)
G369586 NA other downstream 1013093 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1196651 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1531504 1276021 ~ 1276813 (-)
LOC117596167 NA other upstream 31603 2843212 ~ 2853211 (-)
G370658 NA other upstream 2031720 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2577295 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2718383 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 3130430 5942039 ~ 5952313 (-)

Expression


Co-expression Network