LOC117596192


Basic Information

Item Value
gene id LOC117596192
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2874908 ~ 2892085 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300420.1
ATGGGGAACAGGAAGGCCGCACATCCTCTTAAACCCCACCCCCAGAACCATGCTGCAGCCAGAGACAAAAGaacagctctgacccatcgaggcatggactccacgagacctctgaaggtgtgctgtggtacctGGCACTGGATGGGCTACCCTttgctccccacacgcatcactgagccttgggcgcccatgaccctatCGCCGGTTCaacggttgtccttccttggaccacttttgCCCAGCACCAATGAATGTTTATCTCTCTACAACATGACAAGGACACCGAGGACACCGAGGACACCAGCCCTCCAGTTCACACCAGACTTATTCATAGTCAGCGAGGTAGAAATATCTGATCTTGTCATTTATATGGGGTGGAAAAATGCCTTGGATACTGGAGGAATTTCTCCAGAGACAGAGAACTCAAGGTGGACTAGCGCTTCCCAACTTCAGGTTTCAACTTCAGGGCTGCAAACATTTCAAAAGTACCTTATTGGCTTCAGAACCCAAAGGATGTCTGGTGTATTCCAGAGGCAAATTCTTGTCCATCATCATCCCATCCAGCTCTTGCTTTACCCAAATTGCTCCTATCTATTTCAACATATATGCATTGTCCAGTTGTAGCAAACATCCTCAAGATTTGGTTTCAAATTAGAAAATGTTTTGGTTTCCTTGACCTCTCCTTAAGCAGCCCTATATGCAAGAATCATCTATTCCTTGGACTAGCTCAGTTAGACCCAGCTTTTATTCGGTGGAGCCGAGTAGGTCTTGTTAAATTTAGTGACCCATTCATTGATGAATCTCTTGCTCCATTTTCTACTCTCACTTCAAAATATAACCTTCCAAggtcatatttatttagatataTTCAGTTTGTCATTTAATCCAGACCCAATGTCACACCTATCCTTCCATTCTTCCCAGCTCAGTATTGGATGTCATTGTAAATATTCCCTTACATTCAGAGGGAGTAATTGCTAATGCATATAATACTTTACTGTCAATACAAAATATGAAACTGGAAAAATCCAAGCAGACTGGATAAAGGAGCCAGGAGTGGACATATCAGAGGAAACCTGGAATGGTGCACTAGCTTGAGGAAATGGAACAACCTCTTGTACTTGCCTAGATATAATTCAGTTTAAGGTCCTTCACAGACTCTACTACAGCAAGGCAAGGCTGTCCAAGATATATTTACATTTGGATGACACATGTGACCGATGTCACTCTGCAAAAGCGGACTTGGATCATATGTTTTTGGCTTGCCCTAGACTGTCTGACTTCTGGACAACTATCTTCAAAATTTTGTCTGAGGCATTTAGTAAGGAAATCAGGCCTTGTTTTGAATTGGCTGTTTTTGGAGTGCCAGAGGAAGGAGTTGTCATGTCCAAAAAGTGTCAGGATGCTTATGCTTTTGCTGGTCTCCTGGCCCGGAGAAGACTACTACATGATTGGAAATCGAAATCGAATTGGAATTCACTCTGGCTTGGCGACGTGATGGTGTTTTTGAATTtggagtaaataaaatattcacttaGAGGATCcactaaacatttttattcgGTATGGAATCTCATGAATTTATACTTTGAAAAGTGCATAACTCTCCCCTCAATCTAAAATTATAAGTAGAATCAGAAGACCTTTGGGCATGGATATCACAATCAGACAGG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300420.1 True 1673 mRNA 0.43 4 2874908 2892085

Neighbor

gene id symbol gene type direction distance location
LOC113535482 LOC108258552,LOC108258557,LOC108258559,LOC108258561 coding downstream 36119 2833613 ~ 2838789 (-)
LOC113535483 LOC108258552,LOC108258561 coding downstream 47308 2823993 ~ 2827600 (-)
LOC113535756 LOC108258552 coding downstream 63299 2808317 ~ 2811609 (-)
LOC113535480 LOC108258552,LOC108258561,LOC108258559 coding downstream 70779 2797268 ~ 2804129 (-)
LOC113535758 LOC108257886 coding downstream 104251 2768629 ~ 2770657 (-)
gpc5a gpc5 coding upstream 190985 3083070 ~ 3170485 (-)
LOC113535432 slitrk5,LOC108411062,LOC107558902,LOC107730401,LOC107677853,LOC107561275,LOC107698126 coding upstream 719634 3611719 ~ 3618120 (-)
LOC113535829 NA coding upstream 1565350 4457435 ~ 4457541 (-)
LOC117596196 NA coding upstream 1567232 4459317 ~ 4459423 (-)
LOC117596197 NA coding upstream 1569124 4461209 ~ 4461315 (-)
G370019 NA non-coding downstream 53594 2818603 ~ 2821314 (-)
G370028 NA non-coding downstream 84232 2783272 ~ 2790676 (-)
G370023 LOC108257886,LOC108258553,LOC108258555,LOC108258552,LOC108258559,LOC108258557,LOC108262136,LOC108258561,LOC108275310,LOC108257788 non-coding downstream 84854 2771253 ~ 2790054 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding downstream 99513 2774882 ~ 2775395 (-)
G369988 NA non-coding downstream 180331 2694149 ~ 2694577 (-)
G370127 NA non-coding upstream 57336 2949421 ~ 2984930 (-)
LOC117596157 NA non-coding upstream 147089 3039174 ~ 3052202 (-)
G370207 NA non-coding upstream 177913 3069998 ~ 3072601 (-)
G370237 NA non-coding upstream 283059 3175144 ~ 3176945 (-)
G370272 NA non-coding upstream 332935 3225020 ~ 3225235 (-)
LOC117596167 NA other downstream 21697 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 300437 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 1042179 1824204 ~ 1832729 (-)
G369586 NA other downstream 1079684 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1263242 1538453 ~ 1611666 (-)
G370658 NA other upstream 1951244 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2496819 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2637907 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 3049954 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 3123641 6015726 ~ 6033393 (-)

Expression


Co-expression Network