LOC113537335


Basic Information

Item Value
gene id LOC113537335
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5190347 ~ 5191647 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403756.2
cgaaaaataaaaaagcctggATTCATTTTTATAGCTGACTTTCTGAAAGGCCTTTGATAAAATAAGTATTCCCAAGCTGAAATCCCTATATTCATTGACGTCTGACTTAAAGCGATGCGTACTTATTTCTGGTTTGGAACCTGTGGCATCGGGGTGTGGTCACGCATCAGCTGTGGATGGTCACGCATCAGCTGTGGATGGTCACGCAtcagctgtggatggagaggagacGGGTTGAACCGaGAGAAAGGCATGaaccagtgagagagagggagacagagctGACAGAGGTTGcacataacacacacgcacacccataCATGTGGTGGATGGAGAGGCTGGGTCACTTTGGTCACTAGGAGCTAACTGAGATAAGGTGGATGGAGAGGTTGGAGCCCCATGTAAATACTTCACCAGAGAATCTGGCAGAGTATGGAAGATATCAGATATGAGCTACAGTCGAACCCAAATAAAGaaatgcaagcacacacacacacaaacacaaagaagcGTGCCTAAGGCTGCACAAGTAGTTAATACAACaaagggtaaaaaaaagaaagcaatatGAAATACGTACCCAAAATAGACTTACAAAATATAGGCTACATAATTGAATGTATCTGTATATGTTAGCCaacttgctagctagttagtctAATTAGCTTGTTATCCACATTTTTGAGCACAGACTGGAAAATGAAATACCTACACTTAAATGATTACAATTAATGAATGCTTTAGACTACAGGCCTAATCATGGTTTCATTTAAAAGAAGACACTTAGGAGGTTTTTTGGTGAAGTGAAAGCAAGCAGCAatataactgaaattaaaacaacatCAGGGCCGGCCCATGGCATAGGCAACACAGgggcttgtttgtgtgtgtgtgtgcacatgcagtGATCAGCATCAATCATGATGTGTCTCAAAATTTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403756.2 True 942 lncRNA 0.42 3 5190347 5191647

Neighbor

gene id symbol gene type direction distance location
brat1 brat1 coding downstream 77600 5069360 ~ 5112747 (-)
knstrn knstrn coding downstream 563106 4619201 ~ 4627241 (-)
cfap221 cfap221 coding downstream 571539 4596430 ~ 4618808 (-)
LOC117596183 NA coding downstream 665563 4524502 ~ 4524784 (-)
cnpy3 cnpy3,tnrc5,LOC102798477 coding downstream 672359 4511270 ~ 4517988 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding upstream 62046 5253693 ~ 5268198 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding upstream 77863 5269510 ~ 5277092 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding upstream 97038 5288685 ~ 5316195 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding upstream 140273 5331920 ~ 5340521 (-)
urp2 LOC108258299 coding upstream 217964 5409611 ~ 5412773 (-)
G370784 NA non-coding downstream 47 5190075 ~ 5190300 (-)
G370713 NA non-coding downstream 53654 5136207 ~ 5136693 (-)
G370711 NA non-coding downstream 55217 5134838 ~ 5135130 (-)
LOC117596137 NA non-coding downstream 75229 5112753 ~ 5115118 (-)
G370706 NA non-coding downstream 127583 5062554 ~ 5062764 (-)
G370836 NA non-coding upstream 45075 5236722 ~ 5238012 (-)
G370837 NA non-coding upstream 48418 5240065 ~ 5240276 (-)
G370845 NA non-coding upstream 58185 5249832 ~ 5250096 (-)
G370853 NA non-coding upstream 151108 5342755 ~ 5343080 (-)
LOC113537484 NA non-coding upstream 153948 5345595 ~ 5365148 (-)
G370658 NA other downstream 300966 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2337136 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2615876 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 3357618 1824204 ~ 1832729 (-)
G369586 NA other downstream 3395123 1776319 ~ 1795224 (-)
LOC113537294 NA other upstream 197257 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 338345 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 750392 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 824079 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 1166992 6358639 ~ 6363203 (-)

Expression


Co-expression Network