LOC113537576


Basic Information

Item Value
gene id LOC113537576
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5415626 ~ 5429432 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403776.2
AATGAGAATAGCTAGAGAACAGGCTGAGACAGATCAGGTTCTTGTCCATTTGGATGAAagatgagcagagagacagaacaagaaGAATCACTGGCTTTCACATATTGGGAGAGGAAACTACAGAATTCGGGAGAATATCTGACCTACTGCTGTCAGTAACAAGGATTCATCCtgttataaaatacaattcaacAGGAAATCTCTGTTACTGGGGGTAAAGGATCAGTAATTAATGACAAGTATAAATTACATGCAGTGCACCTGATGAGCAAACAACAAGAAGCAATAAGGCTGAAAACAGCTGAAATAAGTTTTCTTGAATGTGAgttttaaattgaataaataagaAGAACGTTACCAGTATTATATGCATGCTTATAACACTGTTTTAGGTTTAGCTTTGATTTAAATATGCTGTAACGTTTTAGTTTTATAcatttgttataattttttaatgtttaaattaaatcttgTAACTTATGTAAAATTGTTTTTCCTTAGTCTTATCTGCACACAACAAGAAAGCGATCGTAAAGCAATGAAAGCACAGTAAGAGCCCCTCTTGCTCTTGCTTACTCTTGCTATTTACTGGCCTGTAAATGATTATGAatccttttttatatttttattctccATGCTACACCTACTGCTTCCCTATCATGCTTGCATTTGGTCTCACACCACTGGCTTGTGGACAGGGTCAGTCTAAGACTGGAGAGACTATGGGGGCAGAGGGGAAAACAGGTGATGTCCAGGCCTCTAGAATGGCCTGACTTGACCTCCATCCCTCAAGGAAGACATGCAACAAtgtcttctctgtcctggcaccaaagtgatggaatgaacttcccctggccGCCacaacagctgagtcactggctgtcttcaaacaaaCACTGAAGATCTACTTCTTCACCAAATGAACATcaagtttaaataataataataaaaaatttgcactgtt
>XR_004577293.1
AATGAGAATAGCTAGAGAACAGGCTGAGACAGATCAGGTTCTTGTCCATTTGGATGAAagatgagcagagagacagaacaagaaGAATCACTGGCTTTCACATATTGGGAGAGGAAACTACAGAATTCGGGAGAATATCTGACCTACTGCTGTCAGTAACAAGGATTCATCCtgttataaaatacaattcaacAGGAAATCTCTGTTACTGGGGGTAAAGGATCAGTAATTAATGACAAGTATAAATTACATGCAGTGCACCTGATGAGCAAACAACAAGAAGCAATAAGGCTGAAAACAGCTGAAATAAGTTTTCTTGAATGTGAgttttaaattgaataaataagaAGAACGTTACCAGTATTATATGCATGCTTATAACACTGTTTTAGGTTTAGCTTTGATTTAAATATGCTGTAACGTTTTAGTTTTATAcatttgttataattttttaatgtttaaattaaatcttgTAACTTATGTAAAATTGTTTTTCCTTAGTCTTATCTGCACACAACAAGAAAGCGATCGTAAAGCAATGAAAGCACAGTAAGAGCCCCTCTTGCTCTTGCTTACTCTTGCTATTTACTGGCCTGTAAATGATTATGAatccttttttatatttttattctccATGCTACACCTACTGCTTCCCTATCATGCTTGCATTTGGTCTCACACCACTGGCTTGTGGACAGGGTCAGTCTAAGACTGGAGAGACTATGGGGGCAGAGGGGAAAACAGGTGATGTCCAGGAGTGTTGTTCTAGAGTTTCCCTGTGGATCATATGACCCCTGCATCTGATCCAGAATCCAGCTGCACAACTAGTTTTCTATCTCCACTGGCTTCTGGCAGATGTTTgcccataaaattaaaaatggaccCTCACCTAGCTGACAGAAATGATCAAACCCTGCTCTGCACCATGTCTCCTTGAAGCCTCTAGAATGGCCTGACTTGACCTCCATCCCTCAAGGAAGACATGCAACAAtgtcttctctgtcctggcaccaaagtgatggaatgaacttcccctggccGCCacaacagct

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403776.2 False 964 lncRNA 0.38 4 5415626 5429432
XR_004577293.1 True 1052 lncRNA 0.40 4 5415721 5429432

Neighbor

gene id symbol gene type direction distance location
urp2 LOC108258299 coding downstream 2853 5409611 ~ 5412773 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding downstream 75105 5331920 ~ 5340521 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding downstream 99431 5288685 ~ 5316195 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding downstream 138534 5269510 ~ 5277092 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding downstream 147428 5253693 ~ 5268198 (-)
wu:fa56d06 LOC108258903 coding upstream 120121 5549553 ~ 5557090 (-)
n6amt1 n6amt1,LOC107563652 coding upstream 160340 5589772 ~ 5596095 (-)
jam2a jam2 coding upstream 466904 5896336 ~ 5908867 (-)
mrpl39 mrpl39 coding upstream 484527 5913959 ~ 5920199 (-)
mrpl16 mrpl16 coding upstream 534320 5963752 ~ 5969065 (-)
LOC113537484 NA non-coding downstream 50478 5345595 ~ 5365148 (-)
G370853 NA non-coding downstream 72546 5342755 ~ 5343080 (-)
G370845 NA non-coding downstream 165530 5249832 ~ 5250096 (-)
G370837 NA non-coding downstream 175350 5240065 ~ 5240276 (-)
G370836 NA non-coding downstream 177614 5236722 ~ 5238012 (-)
G370941 NA non-coding upstream 76680 5506112 ~ 5506317 (-)
G370942 NA non-coding upstream 78670 5508102 ~ 5508369 (-)
LOC117596170 NA non-coding upstream 81284 5510716 ~ 5518380 (-)
G371117 NA non-coding upstream 451044 5880476 ~ 5885612 (-)
LOC117596178 NA non-coding upstream 457414 5886846 ~ 5891797 (-)
LOC113537294 NA other downstream 20614 5388904 ~ 5395012 (-)
G370658 NA other downstream 526245 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2562415 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2841155 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 3582897 1824204 ~ 1832729 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 100560 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 512607 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 586294 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 929207 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 1441134 6870566 ~ 6910546 (-)

Expression


Co-expression Network