LOC113537738


Basic Information

Item Value
gene id LOC113537738
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13386832 ~ 13401425 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403790.2
ccagataagattggacacccctggtttAATCGTTCATGGTGAAATCTCACCCTCAGTTCCCCTTTGTTTGTCAACCATCAGTGAATCATCAGTCAGCTCCTGACGTCTGTGATTTGGACTGACAGATTGTTTACACAGGCATGTTCAACTTCAAGGTCAACTTGACGTGATGCTTTGTTTGAACGTGAATAATGGGTGTCTTTTCACCTCATACCAAAGATCTACTTCAGTGAGAAAAATTCTTCTTAGATTCTGggtgccaatatttctggagcTGACCGAATGACCTCTGATGGGCAATGAGCTATGATGAGTTCTGTAACCAATCCCAGGTACACTGCGTACCAACTGAGGAGGATAACAGGATCGCACATAATATTGCTGTATATATACATCGTTCtttgaaataaat
>XR_003403791.2
aaatatttggaataccCCATGTTCAACAGGAACTTGCATCATAtgcatttcctgaagatcattggaAGAAGAAATggtgccaatatttctggagcTGACCGAATGACCTCTGATGGGCAATGAGCTATGATGAGTTCTGTAACCAATCCCAGGTACACTGCGTACCAACTGAGGAGGATAACAGGATCGCACATAATATTGCTGTATATATACATCGTTCtttgaaataaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403790.2 True 412 lncRNA 0.42 3 13386832 13401425
XR_003403791.2 False 232 lncRNA 0.40 3 13386832 13399913

Neighbor

gene id symbol gene type direction distance location
cd99 NA coding downstream 37998 13321263 ~ 13348834 (-)
trnar-ucu_18 NA coding downstream 58689 13328052 ~ 13328143 (-)
trnar-ucu_17 NA coding downstream 60748 13325993 ~ 13326084 (-)
trnar-ucu_16 NA coding downstream 61224 13325517 ~ 13325608 (-)
trnar-ucu_15 NA coding downstream 62659 13324082 ~ 13324173 (-)
creb1a creb1b,LOC108258958,LOC107757658,LOC107714305,LOC107552236,LOC107691602 coding upstream 15900 13417325 ~ 13427154 (-)
cldng LOC108258891 coding upstream 75047 13476472 ~ 13478258 (-)
lmo7b LOC108259086,LOC108437774 coding upstream 466263 13867688 ~ 13902247 (-)
tpt1 tpt1,LOC107598740,LOC107691594 coding upstream 635005 14036430 ~ 14042668 (-)
LOC113537775 NA coding upstream 636306 14037731 ~ 14037862 (-)
G375329 NA non-coding downstream 115211 13267882 ~ 13271621 (-)
G375141 NA non-coding downstream 553478 12832876 ~ 12833354 (-)
G375121 NA non-coding downstream 644312 12742320 ~ 12742520 (-)
G375119 NA non-coding downstream 645180 12741425 ~ 12741652 (-)
G375097 NA non-coding downstream 689614 12696015 ~ 12697218 (-)
G375420 NA non-coding upstream 15397 13416822 ~ 13417096 (-)
G375455 NA non-coding upstream 97218 13498643 ~ 13505565 (-)
LOC117596174 NA non-coding upstream 102879 13504304 ~ 13507133 (-)
G375466 NA non-coding upstream 119138 13520563 ~ 13520923 (-)
LOC117596119 NA non-coding upstream 427756 13829181 ~ 13830571 (-)
gyg2 gyg2 other downstream 66302 13307713 ~ 13320530 (-)
LOC113537246 NA other downstream 756429 12625051 ~ 12630403 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1302783 12078891 ~ 12084049 (-)
lipt1 lipt1 other downstream 2514276 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 2951465 10422152 ~ 10435367 (-)
G375428 NA other upstream 37794 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 570911 13972336 ~ 13980251 (-)
pibf1 pibf1 other upstream 581320 13982745 ~ 14016151 (-)
G375826 NA other upstream 625869 14027294 ~ 14030879 (-)
rnf11a rnf11a,crgm2,LOC108259033,LOC107757048,LOC108441179,LOC103044796,LOC107694828,LOC107583209,LOC108258879,LOC108260578,LOC108260581,LOC108260584,LOC108260582,LOC108280851,LOC108260580,LOC108260664,LOC108260583 other upstream 704781 14106206 ~ 14180614 (-)

Expression


Co-expression Network