LOC117596121


Basic Information

Item Value
gene id LOC117596121
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15158146 ~ 15158646 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577285.1
GTGGAAACGGAGCGGAGGCGCGTGCGGTCCAGTGACGCTCTCGGTGGAACCGGGGGCGCGCGCGCGGAGTTATCCGaAAGATTTAAACGTTTTTGCTTCTTATATGAAACTGCGCGCGAGACGCACCTGCCGTACCGTGGTTACGGAGTCACGTCTGCGCGCGAGGCTGCAGCTGATTGACACACTTCCGCATCTGCTGGCTCCACGTGCGTGACGGGGATTAATGACGCGCCACGTGGGAACCAGAGCAAAGCCTCGTCTCCACACTGGCTGCTGGGGTTTATAGGCTGAGCTCCGACTTCACAGCTGAGATTTATCTTcacttttttattaacttttttaaagTAACTCTAAACATGTCATTCTGAACCAATAAAAATAATCGATGTAGA

Function

GO:

id name namespace
GO:0140096 catalytic activity, acting on a protein molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577285.1 True 392 lncRNA 0.52 2 15158146 15158646

Neighbor

gene id symbol gene type direction distance location
dla LOC108258338,LOC103023774,LOC108438608,LOC107746130,LOC107703728,LOC107598533,LOC107700799,LOC107594356 coding downstream 15345 15136233 ~ 15142801 (-)
dcaf15 dcaf15,LOC106592097,LOC106594349 coding downstream 44853 15104177 ~ 15113293 (-)
rln3b rln3 coding downstream 80530 15074671 ~ 15077616 (-)
spast spast coding downstream 85801 15060921 ~ 15072345 (-)
LOC113537617 NA coding downstream 199945 14953561 ~ 14958201 (-)
ccsapa LOC108258518 coding upstream 14092 15172738 ~ 15180828 (-)
acta1a acta1,LOC102689871,LOC108414322,LOC108430668,LOC103383882 coding upstream 22987 15181633 ~ 15186072 (-)
nup133 nup133,LOC107700801,LOC107729904,LOC107746127,LOC106958119,LOC106908639,LOC107729676 coding upstream 32659 15191305 ~ 15208140 (-)
ndufaf5 ndufaf5,LOC107684300,LOC107583196,LOC107594415 coding upstream 78214 15236860 ~ 15243012 (-)
LOC113537336 NA coding upstream 91965 15250611 ~ 15258294 (-)
G376615 NA non-coding downstream 5026 15152892 ~ 15153120 (-)
G376613 NA non-coding downstream 10161 15147785 ~ 15147985 (-)
G376608 LOC108259073 non-coding downstream 25856 15132017 ~ 15132290 (-)
G376602 NA non-coding downstream 57134 15099016 ~ 15101012 (-)
G376574 NA non-coding downstream 112787 15044712 ~ 15045359 (-)
G376671 jag1 non-coding upstream 239022 15397668 ~ 15401270 (-)
G376670 LOC107729604,LOC103360699,LOC104950577,LOC105910653 non-coding upstream 302488 15461134 ~ 15462622 (-)
G376755 NA non-coding upstream 389746 15548392 ~ 15549785 (-)
G376758 NA non-coding upstream 452976 15611622 ~ 15653021 (-)
G376763 NA non-coding upstream 516161 15674807 ~ 15679171 (-)
triobpa LOC108259073 other downstream 28890 15117512 ~ 15129256 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 197094 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 408412 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 445500 14697239 ~ 14712646 (-)
G376143 NA other downstream 473818 14682387 ~ 14684328 (-)
dpy30 dpy30,LOC107684266 other upstream 253778 15412424 ~ 15458205 (-)
G376956 NA other upstream 758982 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 771107 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 805230 15963876 ~ 15984959 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 994273 16152919 ~ 16164370 (-)

Expression


Co-expression Network