LOC113547464


Basic Information

Item Value
gene id LOC113547464
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16598913 ~ 16600222 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577292.1
GCTTATAGTGCGTATAACTCATCTGTGAGTGTTGTAAGCCTGAGGTTGTGTTGCATCGGTTCCTGCTTTCCGGCTGTGTGGTCGGTTGACTGGGAggtttcccttttttttaaaggagctcCTCTGCATCGCTGCTTGTGgAGTTGGGGGACGCCGGCAGGGAGGCTTGGCACCGGGTGGCTGGgtacctgtgtttgtgtgtgtttcacctttCTGGCAGTGTAGTGTCACCTGGGTGTGCTGtgcagtgtatatgtgtgcgcTTCACGTGTGGTCTTTTTGGACCCTCCTTCCAGATCGCCTCCCTGTGGTAAGCCCCTGTcctattttatgtgtgtgttctgtcctgTAGGCCTACAGAATAACTGAACCCTGGttatatttgcagtgtttgctattcttttttttatgagttGTAACAAAATCATTGAAAGGAATtcaataaagaaattgtttagTGTGAATCCTGTCTCTGTTTACTTGTGTACGAACCAGTGTTCCTTATGTGGGCTTAATgtgggtggtttttttttttgtatagctaGTTTTCCTAAGGGGGGCATAACTCCCCTGGGTGGCGTGGTCGGTAATCTAAATTCTTATTGGTACCTTGGTCTCGCTACATATGGATAAAGAAAACATTCCAGTTACATGCTTCAGAATGAAATCTAGAAGGAGGAAACTATAACAgtttcagaaagagagagagagagagagagagcatatgtaaggaataaaacactctgtatcTTGATAc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577292.1 True 757 lncRNA 0.45 3 16598913 16600222

Neighbor

gene id symbol gene type direction distance location
zgc:65894 tubb4a,LOC107711200,LOC103367161,LOC108411210,LOC103372938,LOC100712088,LOC108258713,LOC103468788 coding downstream 9283 16583379 ~ 16589630 (-)
LOC117595682 LOC108258708,LOC108258415 coding downstream 39753 16533834 ~ 16559160 (-)
LOC113537390 LOC108258708,LOC108258415 coding downstream 73507 16497785 ~ 16525406 (-)
asf1bb asf1b,asf1bb,LOC107747137,LOC103026007,LOC107703766 coding downstream 180906 16413949 ~ 16418007 (-)
prkacab prkaca,prkacab,LOC107694605,LOC107703755,LOC106526233 coding downstream 187182 16398919 ~ 16411731 (-)
gcgrb LOC108258714,LOC108411214 coding upstream 30402 16630624 ~ 16663097 (-)
LOC113537431 LOC108258715 coding upstream 99875 16700097 ~ 16701130 (-)
si:dkey-27j5.5 LOC108258720 coding upstream 139270 16739492 ~ 16742838 (-)
LOC113537398 NA coding upstream 187899 16788121 ~ 16793721 (-)
LOC113537435 LOC108258733 coding upstream 265006 16865228 ~ 16872437 (-)
G377244 NA non-coding downstream 110782 16487790 ~ 16488131 (-)
G377191 NA non-coding downstream 208110 16389094 ~ 16390803 (-)
G377172 NA non-coding downstream 248454 16350249 ~ 16350459 (-)
G377171 NA non-coding downstream 248853 16349377 ~ 16350060 (-)
G377125 NA non-coding downstream 333266 16263903 ~ 16265647 (-)
G377359 NA non-coding upstream 6108 16606330 ~ 16607547 (-)
G377422 LOC108258724 non-coding upstream 256557 16856779 ~ 16858709 (-)
G377441 NA non-coding upstream 395176 16995398 ~ 16995649 (-)
G377474 NA non-coding upstream 432681 17032903 ~ 17052265 (-)
LOC117596165 NA non-coding upstream 468314 17068536 ~ 17078161 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other downstream 15776 16566253 ~ 16583137 (-)
LOC113537389 NA other downstream 123482 16421261 ~ 16475431 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other downstream 377298 16216750 ~ 16221615 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other downstream 434543 16152919 ~ 16164370 (-)
vps54 vps54,LOC107709616 other downstream 613954 15963876 ~ 15984959 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other upstream 20945 16621167 ~ 16741989 (-)
G377416 LOC108258724 other upstream 244790 16845012 ~ 16851663 (-)
LOC113525650 LOC108258801 other upstream 576560 17176782 ~ 17194992 (-)
G377862 NA other upstream 666007 17266229 ~ 17268030 (-)
LOC113526761 NA other upstream 733074 17333296 ~ 17338806 (-)

Expression


Co-expression Network