LOC117596129


Basic Information

Item Value
gene id LOC117596129
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2199025 ~ 2245158 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577295.1
CCCCAAGGTGCTCTGAGGTAAAGTTGTGTGAGTGCAGCTTTAGCAACGCGGCTAACAGCCAAAAACGCGGACACAGAGTTAGCCCATGAGGAAATAACGAGGACAAATAAACTCGTATTTACTCCCAGGACAGAGTTTCACCGCGGAATCATTCGTAACATGTGAATTTATGGAAATACGAGCGAAAAAAAATGAAGGCGCTTCGtcttgttctgtgttttgtgctAACGGTTGCTGAGAAGAGTCGCGCGCGCAGGCAGCACTGGACTGCAGGTGTTCTATATGCAGTAGACAGGAGGAGAGGAACGTTCAGCCACTTGAAGACCACAAAAAATTCCCTTGTTGTCATTGTCTGGAGGGCTTTCCCGGCGATGTGGATTTGCCAGCGGTCTGATCAGCTATTGAGTGGCGTCTCGGGAGACCAATCAGGATGGTGAATGGGGTGAGGAGTGTACCCGGCGGAGTCTCGTAGGTTGAATGATCGATGCAGACAGTCGACACGGCTTTGAAGAGCTCGCTGCAGGATGGCGAGAGACCCTTAGAAAGATACCTAGTCATCCAGAGCAACCCCATTGAGGAGAATCCTTTCATCACACATAAATTCATGCTTCAGATAACCCAAGTTACCACAGCAACCATGATGGACAGCAACCCAAGGCTGAGGTTGAGGACATTAACACACTTCTACAGACATGATGATCCAGGAGACAGTGACCTGAAGAAAAGCAGGGTTTCTTTTCCTCCAGTGGACTACAAACAGCCAGCACCCAAACTGAGAGACTTCATCACCACAACAAAGGTGGTCATTTTACACTTACACTGAACCACCAGTTCAGCCTCCTCAAAGTGGACCAATGAGTCAAAATGGCCACCATCTCCATTCAGGTTATGATCTATGTACTGATCATCCCAGTAAGTATCTCTTTCCTTCAGTAACAGGACAAATATGTCACATCTGCCACCAAATCCAGCCTGGTTCTCCTGGACCTGCTCACATCTCACACCAAAACGATGGTGTTATAAGTAGCACTTGCTACTGCTCTACCAGGCCCTGAACATATTTGACTAACCTAAATTCACAGCTTGTGAAACCTGAGGCTTTGAAAATATACTGCTAAAATACTTGTCCTTGTATTTGTTACATGAAGACTAGGGTTCCCTGGCCATAATTATCGATAtcaattcctggccagggaaccaaccccggcaactggggttgcacatgacagtgcactcccagtgccggtcccaagcccggatacaATTGgcgagggttgcatcag
>XR_004577296.1
CCCCAAGGTGCTCTGAGGTAAAGTTGTGTGAGTGCAGCTTTAGCAACGCGGCTAACAGCCAAAAACGCGGACACAGAGTTAGCCCATGAGGAAATAACGAGGACAAATAAACTCGTATTTACTCCCAGGACAGAGTTTCACCGCGGAATCATTCGTAACATGTGAATTTATGGAAATACGAGCGAAAAAAAATGAAGGCGCTTCGtcttgttctgtgttttgtgctAACGGTTGCTGAGAAGAGTCGCGCGCGCAGGCAGACAGGAAGGCTGCAGCGACTCGAATAACCACTcattacaaccgtggtgagcagaaaagcatctcagaatgcacaacacaccaaaGCCTGAAGCAGATAAGCAAAGGaagaagactggaaaaacattttaaaacaaaaaCTTTTGAATATTCACTTATCTTGAGGCCTATTTCAGTTCCAACACTGCAACACTTAAAAATGGTCAGTGTTTTATAACACAACGCTGTCGAATTCTCGAtgatgattggtcagaaggtttggATTAAT

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577295.1 True 1283 lncRNA 0.48 6 2199025 2245158
XR_004577296.1 False 526 lncRNA 0.43 3 2244126 2245158

Neighbor

gene id symbol gene type direction distance location
klf7a LOC108258322 coding downstream 261950 1915663 ~ 1937075 (-)
LOC113535707 LOC108258365,LOC108437114 coding downstream 289651 1895048 ~ 1909374 (-)
pard3ba pard3b coding downstream 460090 1618820 ~ 1738935 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding downstream 680654 1512321 ~ 1518371 (-)
LOC113535431 LOC108258373 coding downstream 833119 1355723 ~ 1365906 (-)
LOC117596168 NA coding upstream 11263 2256421 ~ 2259148 (-)
LOC113535651 NA coding upstream 16131 2261289 ~ 2271653 (-)
LOC113535598 LOC108258873 coding upstream 37633 2282791 ~ 2331670 (-)
LOC113535761 NA coding upstream 102070 2347228 ~ 2350989 (-)
LOC113535442 LOC108258868,LOC108258869 coding upstream 255872 2501030 ~ 2515018 (-)
LOC117596130 NA non-coding downstream 11083 2186646 ~ 2187942 (-)
LOC117596194 NA non-coding downstream 54574 2115578 ~ 2144451 (-)
G369663 NA non-coding downstream 177710 2018715 ~ 2021315 (-)
G369641 NA non-coding downstream 309651 1888504 ~ 1889374 (-)
G369618 NA non-coding downstream 344372 1854440 ~ 1854653 (-)
LOC113535806 NA non-coding upstream 97955 2343113 ~ 2345533 (-)
G369891 NA non-coding upstream 265598 2510756 ~ 2510962 (-)
G369907 NA non-coding upstream 275340 2520498 ~ 2522127 (-)
G369924 LOC107702554 non-coding upstream 310821 2555979 ~ 2558809 (-)
G369926 NA non-coding upstream 314055 2559213 ~ 2560060 (-)
mdh1b mdh1b other downstream 366296 1824204 ~ 1832729 (-)
G369586 NA other downstream 403801 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 587359 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 922212 1276021 ~ 1276813 (-)
G369125 actb other downstream 1283342 911553 ~ 915683 (-)
LOC113535702 mx1 other upstream 321599 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 598054 2843212 ~ 2853211 (-)
G370658 NA other upstream 2598171 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 3143746 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 3284834 5529992 ~ 5547032 (-)

Expression


Co-expression Network