LOC117596130


Basic Information

Item Value
gene id LOC117596130
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2186646 ~ 2187942 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577297.1
GAATCAGCAGGTCCCAAGATAGATAGCAGTGGTAGCGCTTAGCTTTCACAGCATGCTAGCATTCATAACAGCCCTCTATGCTTCTTCTTTTAAAGCTTCACTGAGTGCTTGTGACACATGAAACTGCCATGGCGAGATGAGAAATAACCAGTGTCTGCTTCCATCACTgctttaaaagatttaaatccCAGCGAGGGTGAGGTCCGATTTGTAACTCAAGCTATCCAAGTCAACCTGGCTGCCTATTTTGGAAAAGGTCTGCAGCAGGCTTGCTGACTCCCTGTGGAATTTCATGACTGAGAATTCTGAGGAAATGAAGCCTCTTTTCTAATTAACCCCTGATTCATTTGCATTCCCTTCTATGCAGTTTTCTCTCCACAGGTTCGGATTCAGGTGTTACGGTCTGGACCAGTGACTCCGGAGCGATAAGGAAGCCTGCTGTGAGAGGTTCAGCCCCCAAGCAATTAAATTGCGCTGTTGGTTTTTTAAATAAGGAAGCCGTCGAAGTCTGTTTAGAGACTTGCTGTTGGTATTTACCCTCTGAATGGAAAGCTTAAGTAGTGTCGCTAACAGAAATCTATCATGGCTAAAATTCTGATTATTCacaaagcacatttaaaagatGACGTTACCCAAAGCAGCATGTCGCAAAACTTCCAGTTAACCCCATTTTCAGGGAAAACAATGCTTCAAAGTGCACCTGCTTCCTGTTCCTGATGTTCCCGTGGAGAGTTCGGCGAGTCTCTCAGTTTCTGTCCTCAGACATCATCTGATAACTtgattattaactttttttttctccagccaTCTGCTGCTGTTCCTCTCTTATTTACTTAATTAGAACGAGTCCTCAGGGGGGAATGATCGAGTTACCAACCAACAGAAGAATGAAAGGCATTGCATTAGCACCAGTGTTTTATAAAGAATCGGGAAATAATTTGAATCAAAAATCAAGAAATCCGAAATCATAGCTGATTAAGCTGACTGCTGAATCTAGTCCAAAAAGAGTatgacttcttcttcttttccaaaATGTGACAGtaaaaatattgactattgctctctctctctctctctctc
>XR_004577298.1
GAATCAGCAGGTCCCAAGATAGATAGCAGTGGTAGCGCTTAGCTTTCACAGCATGCTAGCATTCATAACAGCCCTCTATGCTTCTTCTTTTAAAGCTTCACTGAGTGCTTGTGACACATGAAACTGCCATGGCGAGATGAGAAATAACCAGTGTCTGCTTCCATCACTgctttaaaagatttaaatccCAGCGAGGGTGAGGTCCGATTTGTAACTCAAGCTATCCAAGTCAACCTGGCTGCCTATTTTGGAAAAGGTCTGCAGCAGGCTTGCTGACTCCCTGTGGAATTTCATGACTGAGAATTCTGAGGAAATGAAGCCTCTTTTCTAATTAACCCCTGATTCATTTGCATTCCCTTCTATGCAGGTTCGGATTCAGGTGTTACGGTCTGGACCAGTGACTCCGGAGCGATAAGGAAGCCTGCTGTGAGAGGTTCAGCCCCCAAGCAATTAAATTGCGCTGTTGGTTTTTTAAATAAGGAAGCCGTCGAAGTCTGTTTAGAGACTTGCTGTTGGTATTTACCCTCTGAATGGAAAGCTTAAGTAGTGTCGCTAACAGAAATCTATCATGGCTAAAATTCTGATTATTCacaaagcacatttaaaagatGACGTTACCCAAAGCAGCATGTCGCAAAACTTCCAGTTAACCCCATTTTCAGGGAAAACAATGCTTCAAAGTGCACCTGCTTCCTGTTCCTGATGTTCCCGTGGAGAGTTCGGCGAGTCTCTCAGTTTCTGTCCTCAGACATCATCTGATAACTtgattattaactttttttttctccagccaTCTGCTGCTGTTCCTCTCTTATTTACTTAATTAGAACGAGTCCTCAGGGGGGAATGATCGAGTTACCAACCAACAGAAGAATGAAAGGCATTGCATTAGCACCAGTGTTTTATAAAGAATCGGGAAATAATTTGAATCAAAAATCAAGAAATCCGAAATCATAGCTGATTAAGCTGACTGCTGAATCTAGTCCAAAAAGAGTatgacttcttcttcttttccaaaATGTGACAGtaaaaatattgactattgctctctctctctctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577297.1 True 1080 lncRNA 0.42 3 2186646 2187942
XR_004577298.1 False 1066 lncRNA 0.42 3 2186646 2187942

Neighbor

gene id symbol gene type direction distance location
klf7a LOC108258322 coding downstream 249571 1915663 ~ 1937075 (-)
LOC113535707 LOC108258365,LOC108437114 coding downstream 277272 1895048 ~ 1909374 (-)
pard3ba pard3b coding downstream 447711 1618820 ~ 1738935 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding downstream 668275 1512321 ~ 1518371 (-)
LOC113535431 LOC108258373 coding downstream 820740 1355723 ~ 1365906 (-)
LOC117596168 NA coding upstream 68479 2256421 ~ 2259148 (-)
LOC113535651 NA coding upstream 73347 2261289 ~ 2271653 (-)
LOC113535598 LOC108258873 coding upstream 94849 2282791 ~ 2331670 (-)
LOC113535761 NA coding upstream 159286 2347228 ~ 2350989 (-)
LOC113535442 LOC108258868,LOC108258869 coding upstream 313088 2501030 ~ 2515018 (-)
LOC117596194 NA non-coding downstream 42195 2115578 ~ 2144451 (-)
G369663 NA non-coding downstream 165331 2018715 ~ 2021315 (-)
G369641 NA non-coding downstream 297272 1888504 ~ 1889374 (-)
G369618 NA non-coding downstream 331993 1854440 ~ 1854653 (-)
G369617 NA non-coding downstream 332864 1853349 ~ 1853782 (-)
LOC117596129 NA non-coding upstream 11083 2199025 ~ 2245158 (-)
LOC113535806 NA non-coding upstream 155171 2343113 ~ 2345533 (-)
G369891 NA non-coding upstream 322814 2510756 ~ 2510962 (-)
G369907 NA non-coding upstream 332556 2520498 ~ 2522127 (-)
G369924 LOC107702554 non-coding upstream 368037 2555979 ~ 2558809 (-)
mdh1b mdh1b other downstream 353917 1824204 ~ 1832729 (-)
G369586 NA other downstream 391422 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 574980 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 909833 1276021 ~ 1276813 (-)
G369125 actb other downstream 1270963 911553 ~ 915683 (-)
LOC113535702 mx1 other upstream 378815 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 655270 2843212 ~ 2853211 (-)
G370658 NA other upstream 2655387 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 3200962 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 3342050 5529992 ~ 5547032 (-)

Expression


Co-expression Network