LOC117596178


Basic Information

Item Value
gene id LOC117596178
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5886846 ~ 5891797 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577356.1
GTTAAGGAGAAGTTTACCTAGCTTTGGCAGTTTTATTCACAACTTCATTTATAGACCCTATATAAACTGTCAATCTGGTTGTCTTTACAAAGTTGCACAACCTGCTGTAAATAGTTTCACTGCTCCTTTTGCCCTGTGAAATTGTTCAAGCCAAGCAATCAGATGGAGGCAATCATAGAGAGGACTTTTGCTGTCCTACAGTGTGACAGGGCTTATTAAATATGTCATTTGTGTTGGAGGTCATGACTCCAGAGATGAGAATGCACGCAGGCCAGCACTATGATCATTGAGAGCTTTCAAGTGCTATCTTGGAATACAGATTAATATAAttatctgaacacacactccaccttGCTCcctttgacacacacacagagagagagagagagagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577356.1 True 396 lncRNA 0.41 5 5886846 5891797

Neighbor

gene id symbol gene type direction distance location
n6amt1 n6amt1,LOC107563652 coding downstream 290751 5589772 ~ 5596095 (-)
wu:fa56d06 LOC108258903 coding downstream 329756 5549553 ~ 5557090 (-)
urp2 LOC108258299 coding downstream 474073 5409611 ~ 5412773 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding downstream 546325 5331920 ~ 5340521 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding downstream 570651 5288685 ~ 5316195 (-)
jam2a jam2 coding upstream 4539 5896336 ~ 5908867 (-)
mrpl39 mrpl39 coding upstream 22162 5913959 ~ 5920199 (-)
mrpl16 mrpl16 coding upstream 71955 5963752 ~ 5969065 (-)
txnl4b txnl4b coding upstream 79243 5971040 ~ 5973439 (-)
blzf1 blzf1 coding upstream 84580 5976377 ~ 5983797 (-)
G371117 NA non-coding downstream 1234 5880476 ~ 5885612 (-)
LOC117596170 NA non-coding downstream 368466 5510716 ~ 5518380 (-)
G370942 NA non-coding downstream 378477 5508102 ~ 5508369 (-)
G370941 NA non-coding downstream 380529 5506112 ~ 5506317 (-)
LOC113537576 NA non-coding downstream 457414 5415626 ~ 5429432 (-)
G371121 NA non-coding upstream 529 5892326 ~ 5895688 (-)
G371147 ercc5 non-coding upstream 101692 5993489 ~ 5994747 (-)
G371152 NA non-coding upstream 106206 5998003 ~ 5998159 (-)
G371153 NA non-coding upstream 107051 5998848 ~ 5999474 (-)
G371135 NA non-coding upstream 109382 6001179 ~ 6001613 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 339814 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 491834 5388904 ~ 5395012 (-)
G370658 NA other downstream 997465 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 3033635 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 3312375 2566757 ~ 2574471 (-)
LOC113537623 NA other upstream 50242 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 123929 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 466842 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 978769 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 1167038 7058835 ~ 7068531 (-)

Expression


Co-expression Network