LOC117596183


Basic Information

Item Value
gene id LOC117596183
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4524502 ~ 4524784 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577360.1
CGTTTAATAATGTACATTTGCTCTCTGttaaacacacagtgtaacaTGCTATTCCTGAAAACAATCATTACAtgtagatGACAACAGATGACCATAAAACACAAGGACAATTAACATGCAAGTTCCACCTATGGGCAGTTTAGCTTAGCTAATCTGCCTACCTGAAaattttgggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577360.1 True 177 ncRNA 0.37 2 4524502 4524784

Neighbor

gene id symbol gene type direction distance location
cnpy3 cnpy3,tnrc5,LOC102798477 coding downstream 6514 4511270 ~ 4517988 (-)
LOC113535753 LOC108258306,LOC108439384,LOC106595798 coding downstream 19763 4488149 ~ 4504739 (-)
LOC117596198 NA coding downstream 61288 4463108 ~ 4463214 (-)
LOC117596197 NA coding downstream 63187 4461209 ~ 4461315 (-)
LOC117596196 NA coding downstream 65079 4459317 ~ 4459423 (-)
cfap221 cfap221 coding upstream 71646 4596430 ~ 4618808 (-)
knstrn knstrn coding upstream 94417 4619201 ~ 4627241 (-)
brat1 brat1 coding upstream 544576 5069360 ~ 5112747 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding upstream 728909 5253693 ~ 5268198 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding upstream 744726 5269510 ~ 5277092 (-)
G370468 NA non-coding downstream 77396 4446458 ~ 4447106 (-)
G370425 NA non-coding downstream 382374 4141922 ~ 4142128 (-)
G370418 NA non-coding downstream 537880 3986205 ~ 3986622 (-)
G370416 NA non-coding downstream 540923 3983111 ~ 3983579 (-)
G370415 NA non-coding downstream 541562 3981710 ~ 3982940 (-)
G370665 NA non-coding upstream 280096 4804880 ~ 4811748 (-)
G370663 NA non-coding upstream 371443 4896227 ~ 4914035 (-)
G370699 NA non-coding upstream 521256 5046040 ~ 5046246 (-)
G370702 NA non-coding upstream 534069 5058853 ~ 5059054 (-)
G370705 NA non-coding upstream 537360 5062144 ~ 5062436 (-)
LOC117596167 NA other downstream 1671291 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 1950031 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 2691773 1824204 ~ 1832729 (-)
G369586 NA other downstream 2729278 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 2912836 1538453 ~ 1611666 (-)
G370658 NA other upstream 318545 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 864120 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 1005208 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 1417255 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 1490942 6015726 ~ 6033393 (-)

Expression


Co-expression Network