LOC117596196


Basic Information

Item Value
gene id LOC117596196
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4459317 ~ 4459423 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577365.1
GTGCTTGCTTTGGCAGCACATATACTAAAATTGGATCGATACAGAGAAGATTAGCATGGCCCCTGCGAAAGGATGACACGCAAATCTGTGAAGCGTTCCTCGTTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577365.1 True 107 ncRNA 0.46 1 4459317 4459423

Neighbor

gene id symbol gene type direction distance location
LOC113535829 NA coding downstream 1776 4457435 ~ 4457541 (-)
LOC113535432 slitrk5,LOC108411062,LOC107558902,LOC107730401,LOC107677853,LOC107561275,LOC107698126 coding downstream 841197 3611719 ~ 3618120 (-)
gpc5a gpc5 coding downstream 1288832 3083070 ~ 3170485 (-)
LOC117596192 NA coding downstream 1567232 2874908 ~ 2892085 (-)
LOC113535482 LOC108258552,LOC108258557,LOC108258559,LOC108258561 coding downstream 1620528 2833613 ~ 2838789 (-)
LOC117596197 NA coding upstream 1786 4461209 ~ 4461315 (-)
LOC117596198 NA coding upstream 3685 4463108 ~ 4463214 (-)
LOC113535753 LOC108258306,LOC108439384,LOC106595798 coding upstream 28726 4488149 ~ 4504739 (-)
cnpy3 cnpy3,tnrc5,LOC102798477 coding upstream 51847 4511270 ~ 4517988 (-)
LOC117596183 NA coding upstream 65079 4524502 ~ 4524784 (-)
G370468 NA non-coding downstream 12211 4446458 ~ 4447106 (-)
G370425 NA non-coding downstream 317189 4141922 ~ 4142128 (-)
G370418 NA non-coding downstream 472695 3986205 ~ 3986622 (-)
G370416 NA non-coding downstream 475738 3983111 ~ 3983579 (-)
G370415 NA non-coding downstream 476377 3981710 ~ 3982940 (-)
G370665 NA non-coding upstream 345457 4804880 ~ 4811748 (-)
G370663 NA non-coding upstream 436804 4896227 ~ 4914035 (-)
G370699 NA non-coding upstream 586617 5046040 ~ 5046246 (-)
G370702 NA non-coding upstream 599430 5058853 ~ 5059054 (-)
G370705 NA non-coding upstream 602721 5062144 ~ 5062436 (-)
LOC117596167 NA other downstream 1606106 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 1884846 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 2626588 1824204 ~ 1832729 (-)
G369586 NA other downstream 2664093 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 2847651 1538453 ~ 1611666 (-)
G370658 NA other upstream 383906 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 929481 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 1070569 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 1482616 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 1556303 6015726 ~ 6033393 (-)

Expression


Co-expression Network