trnar-ucu_18


Basic Information

Item Value
gene id trnar-ucu_18
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13328052 ~ 13328143 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnar-ucu_18
GGCTCTGTGGCGCAATGGATAGCGCATTGGACTTCTAATtcaaaggttgtgggttcgagtcccaCCAGAGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ucu_18 True 73 tRNA 0.53 2 13328052 13328143

Neighbor

gene id symbol gene type direction distance location
trnar-ucu_17 NA coding downstream 1968 13325993 ~ 13326084 (-)
trnar-ucu_16 NA coding downstream 2444 13325517 ~ 13325608 (-)
trnar-ucu_15 NA coding downstream 3879 13324082 ~ 13324173 (-)
pnpla4 pnpla4 coding downstream 576213 12744261 ~ 12751839 (-)
LOC113537226 NA coding downstream 668559 12643939 ~ 12659493 (-)
creb1a creb1b,LOC108258958,LOC107757658,LOC107714305,LOC107552236,LOC107691602 coding upstream 89182 13417325 ~ 13427154 (-)
cldng LOC108258891 coding upstream 148329 13476472 ~ 13478258 (-)
lmo7b LOC108259086,LOC108437774 coding upstream 539545 13867688 ~ 13902247 (-)
tpt1 tpt1,LOC107598740,LOC107691594 coding upstream 708287 14036430 ~ 14042668 (-)
LOC113537775 NA coding upstream 709588 14037731 ~ 14037862 (-)
G375329 NA non-coding downstream 56431 13267882 ~ 13271621 (-)
G375141 NA non-coding downstream 494698 12832876 ~ 12833354 (-)
G375121 NA non-coding downstream 585532 12742320 ~ 12742520 (-)
G375119 NA non-coding downstream 586400 12741425 ~ 12741652 (-)
G375097 NA non-coding downstream 630834 12696015 ~ 12697218 (-)
LOC113537738 NA non-coding upstream 58689 13386832 ~ 13401425 (-)
G375420 NA non-coding upstream 88679 13416822 ~ 13417096 (-)
G375455 NA non-coding upstream 170500 13498643 ~ 13505565 (-)
LOC117596174 NA non-coding upstream 176161 13504304 ~ 13507133 (-)
G375466 NA non-coding upstream 192420 13520563 ~ 13520923 (-)
gyg2 gyg2 other downstream 7522 13307713 ~ 13320530 (-)
LOC113537246 NA other downstream 697649 12625051 ~ 12630403 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1244003 12078891 ~ 12084049 (-)
lipt1 lipt1 other downstream 2455496 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 2892685 10422152 ~ 10435367 (-)
G375428 NA other upstream 111076 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 644193 13972336 ~ 13980251 (-)
pibf1 pibf1 other upstream 654602 13982745 ~ 14016151 (-)
G375826 NA other upstream 699151 14027294 ~ 14030879 (-)
rnf11a rnf11a,crgm2,LOC108259033,LOC107757048,LOC108441179,LOC103044796,LOC107694828,LOC107583209,LOC108258879,LOC108260578,LOC108260581,LOC108260584,LOC108260582,LOC108280851,LOC108260580,LOC108260664,LOC108260583 other upstream 778063 14106206 ~ 14180614 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnar-ucu-8 NA coding NC_048583.1 CM023237.2 22704704 ~ 22704795 (+)
eurasian perch (Perca fluviatilis) trnar-ucu_13 NA coding NC_053122.1 CM020919.1 19516853 ~ 19516945 (+)
tiger barb (Puntius tetrazona) trnar-ucu_73 NA coding NW_025048114.1 JAEQBD010000459.1 1411479 ~ 1411568 (+)
tiger barb (Puntius tetrazona) trnaa-agc_7 NA coding NC_056702.1 CM032071.1 26097181 ~ 26097253 (-)
mexican tetra (Astyanax mexicanus) trnar-ucu_43 NA coding NW_019172899.1 APWO02000093.1 35722 ~ 35813 (+)