G389501


Basic Information

Item Value
gene id G389501
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 428491 ~ 445978 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU461938
ATCAAATCaatcaacaattaaacaaagACTTGAAATTCATAACTGAGCTCATTTGAACTTGTTAGTAATGCACTGAGCAAACAGATGTGTTGGTTAGATTTTGCTTTTTACGGGAATCagcatgtgtcagtgtgtataaCATCcttttacatttgtgttttaaataaatgtgtggtgTTTATTCTAAAGTAATGATTGTCAGTAATTATTCTATCGAGTCTGTTGTAGGAAGTTCAGCACTGGACTGGACTCCTGTCTAGATCTTGAAGTTTGTACACCCTCAGGTAGACGTTACATTACATGCAGGTAACATGCCAATTTCACTTCAGTCTGTACTTAGAACCAGAAAGATCATACTCATGCTtgcaaacatttaataaaaaaactttttatataatgtgtgatcatgcttcatttttatgtgacattttaaaacGAGCGTAATGAAGTTTTAGACAAAAATTACTCTGTAAAAATATAGCTCAGTTGGTtctgaataaacacattaacacttagTGTAGAATGAACAGAATGATCACTTCAGGGTTAGTTTCAGAACTTTACACGTcttgtgtaaaagaaaaataaagttggTGATTTCTGCAGTCTGGTCGTCCATCACCACTTCccctttactgtgtgtgtgagacggagAGCTGAACACTGAACCAACCACAAACTTCTGCACCAACTATGACAAGTGTCACTGTTTTGtcatttcctttctctcttaATGGTTCATTAAATGTTTTGGAGGTTGTGCATTATAAAGATGGGGACAGTGAAGAGTTGTCAGTATTTGTGTGAGACATTTTGGTACCTGAGCTTGTTAAAGGTAAAAGCAC
>TU461939
ATCAAATCaatcaacaattaaacaaagACTTGAAATTCATAACTGAGCTCATTTGAACTTGTTAGTAATGCACTGAGCAAACAGATGTGTTGGTTAGATTTTGCTTTTTACGGGAATCagcatgtgtcagtgtgtataaCATCcttttacatttgtgttttaaataaatgtgtggtgTTTATTCTAAAGTAATGATTGTCAGTAATTATTCTATCGAGTCTGTTGTAGGAAGTTCAGCACTGGACTGGACTCCTGTCTAGATCTTGAAGTTTGTACACCCTCAGGTAGACGTTACATTACATGCAGGTAACATGCCAATTTCACTTCAGTCTGTACTTAGAACCAGAAAGATCATACTCATGCTtgcaaacatttaataaaaaaactttttatataatgtgtgatcatgcttcatttttatgtgacattttaaaacGAGCGTAATGAAGTTTTAGACAAAAATTACTCTGTAAAAATATAGCTCAGTTGGTtctgaataaacacattaacacttagTGTAGAATGAACAGAATGATCACTTCAGGGTTAGTTTCAGAACTTTACACGTcttgtgtaaaagaaaaataaagttggTGATTTCTGCAGTCTGGTCGTCCATCACCACTTCccctttactgtgtgtgtgagacggagAGCTGAACACTGAACCAACCACAAACTTCTGCACCAACTATGACAAGTGTCACTGTTTTGtcatttcctttctctcttaATGGTTCATTAAATGTTTTGGAGGTTGTGCATTATAAAGATGGGGACAGTGAAGAGTCAGTATTTGTGTGAGACATTTTGGTACCTGAGCTTGTTAAAGGTAAAAGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU461938 True 845 lncRNA 0.35 2 428491 445978
TU461939 False 842 lncRNA 0.35 2 428491 445978

Neighbor

gene id symbol gene type direction distance location
LOC117596377 LOC108260518 coding upstream 19935 405110 ~ 408556 (+)
trnak-uuu_21 NA coding upstream 110837 317582 ~ 317654 (+)
rps6 rps6 coding upstream 138831 284647 ~ 289660 (+)
LOC113524531 LOC108260598 coding upstream 247749 125116 ~ 180742 (+)
LOC117596316 LOC108260515,LOC108260518,LOC108260589 coding downstream 15327 461305 ~ 499554 (+)
LOC117596373 LOC108260589,LOC108260518 coding downstream 28137 474115 ~ 483907 (+)
LOC113545724 NA coding downstream 66832 512810 ~ 517919 (+)
LOC113545735 NA coding downstream 118859 564837 ~ 565963 (+)
LOC113545725 NA coding downstream 278149 724127 ~ 727917 (+)
LOC117596380 NA non-coding upstream 281 427595 ~ 428210 (+)
G389498 NA non-coding upstream 24071 403704 ~ 404420 (+)
G389492 NA non-coding upstream 52543 339600 ~ 375948 (+)
G389442 NA non-coding upstream 53821 352807 ~ 374670 (+)
G389490 LOC108260594,LOC108260595,LOC108260596 non-coding upstream 81898 338873 ~ 346593 (+)
G389505 NA non-coding downstream 158441 604419 ~ 658738 (+)
G389506 NA non-coding downstream 166325 612303 ~ 731165 (+)
G389515 NA non-coding downstream 290881 736859 ~ 741306 (+)
LOC117596382 NA non-coding downstream 492688 938666 ~ 939174 (+)
G389542 NA non-coding downstream 534445 980423 ~ 998703 (+)
LOC117596315 NA other upstream 78486 348396 ~ 350005 (+)
LOC113524533 NA other upstream 80156 333139 ~ 348335 (+)
smu1b LOC108260605,LOC108431794,LOC107720315,LOC107692159,LOC107746727,LOC107551820 other upstream 100000 290979 ~ 328491 (+)
G389456 LOC108260598 other upstream 247478 99214 ~ 181013 (+)
G389524 NA other downstream 341398 787376 ~ 800566 (+)
G389525 NA other downstream 358382 804360 ~ 805216 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other downstream 1173319 1619297 ~ 1632772 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other downstream 1269287 1715265 ~ 1750762 (+)
LOC113545784 clhc1 other downstream 1918576 2364554 ~ 2386867 (+)

Expression


Co-expression Network