G389515


Basic Information

Item Value
gene id G389515
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 736859 ~ 741306 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU461961
CTTTCAGGCATAAAACTTGTTACTTATCACATTTTCTAGTTTTCTCTAGTGGCAGAATTCATGATTATTTACTGTAGCATGGAAATCCACCAAATAACTAGAATGTCTGATATAAGTTTATTTGAAATGTACAAATAATCTAAGCATTTTAAAcgaaaaaacgtgtgtaatcgttgatatggtgacgttttctgtaaggagatgtttatttaacatgtaacatgtggagtctccagtgtcagtgctttttaacagtcagaggtaaagctgtaatttttctTTAGGGCAGAGGAGTTCACGCTTTtaaaatgcaactataaacgggtaaaaagtacaaagtgttgttctttaataaataaaaactattagTAATCATcgataaattgctgtgatataagagaaatgaaacactttggtgctttaggacaataatcaactttgggaacagtgagaaatgaaaacattttataaccTACATTCCAGacaaaattaacactttttgaTCTTTTGAGTGTTTATGTAGCAAAATAGCTTCACAGTTTTAGGTTCGTTGTCATCAATGCAGCTATGTATATctatgtaatattattattattattttttcatagtCCTAGTTCTAGATTTTCTCCCTCCCAGGATTCCAGTCTGGGAAATCCTGATCTGGACTTTATCTGAGCTAACACGAACAGGATGTATTTATAgataaattttgtttttttctcgaATCTCCCTTTAATTTGCAGTCAGCGAATCAGAGAACAAACACCTGCCTTCACATTCATTACATCACTTATATTTTCATAAGGTTTCATACCAGGCCGTGTCCTCCATGAAGATCCCCTCCTTCTCCAGCTGCATAAACAGCTCACCACCTGTTTTAATGAGGTTTCGAAATACATTTGTACAGGATTTGATGTAAATATGATATGCAGATAACAATACTGAGATGAAGGACATGATGAAAATATGCAGATTAACTGTTAATCCTGTTAGCTACAGATTTTATACTTTAGATTTGCCTCCGTCTCAAAGGACCaactttacatttttcacaaattCTTCAGTGAAACTGTTTTTGTACACTTGAGGTAGAACACTTTGGTATTCCCAAACATCTCATTATCCCTGTACGCTTCAATACCCCATAAACCTCGGCATCCCTGTGCGCCTCGGTAtcctgtacacttcagtattccaacTTGGCACCTCCATTACACCTTGGTACCTCAGTACACCTCGGTATTCCCATATCTCAGTATCCCTGTTCACCTTGGTATTGAGGTGCACCTTAGTACCCAATACACCTCTGTATCAAGTACACTTCCGTATCCCAATACACCCTGGTATTCCTGTACACTTTGGTATTCCCATACACCTGGTACCCAGTTAGATCTCTGTATTCCCATACACCTCAGTATCCTGGATGATTCAGTATCCCCATACACCTCAGTATTCCTGTACACCTTGGTATTCCCAAACATCTCAGTATCCTGGATGATTCAGTATCCCCATATACCTCGGTATTCCCAAACACCTCAGTATCCTGGATGATTCAGTATCCCCATACACCCCGGTATTCCTGTACACCTCGGTATTCCCAAACATCTCAGTATCCTGGATGATTCAGTATCCCCATACACCCCGGTATTCCTGTATACCTTGATATTCCCATACACCTGGTACCCAGTTAGATCTCTGTATTCCCATACACCTCAGTATCCTGGATGATTCAGTATCCCCATATACCTCAGTATTCCTGTACACCTCGGTATTCCCAAACATCTCAGTATCCTGGATGATTCAGTATCCCCATATACCTCGGTATTCCCAAACACCTCAGTATCCTGGATGATTCAGTATCCCCATACACCTCAGTATTCCTGGATGATTCCCAAACATCCCCATGATTCAGTATCCCCATACACCTCGGTATTCCTGTACACCTTGGTATTCCCAAACACCTCTGTATCCTGGATGATTCAGTATCCCCATACACCTCGGTATTCCTGTACACCTTGGTATTCCCAAACATCTCGGTATCCCAGGACAAATTCTTCAGTAAAGGTGTTTGGTAGTGAACTATAGTGCCACTCTATATTTTCACAAATCAGGTAAGGATTAGGGATttcatcataatttttttaaacttgtttacATTAAACAGCATGGCTAACACTCCAGTCATTCATGTTGATAATGAAACCTGTTAAAGCAGGTAAAACCCCATTAGCTGGTTGTAGCTTCAGGTTTTGTTTACACCACACCCACCACTCAGACACTCCAGTATGAGGTAGAGTTTGCCGCCGGTCTGGAAGGCGTACCACAGGTCCACGATGAAGGGGTGACGCACCGTCTCCAGGATCTCTCGCTCCGCCCTTGTGTGTGCTGTGTCCTTCGCACTGCACACTATTTTTGCCTGAAAGATGGAaagagtgtgtttatatgtgcaACAAGTGagcttctttcttctttctcccttcttttaataaagaaataacttCTTTTCCATGAATTGgctataataatttaaaaggcTGATGGTAGGAGGGGTAAAGGTACTGTCTTCCCTGAGCAGAAATTTAACTAAAAATGAACTGAACCTTGGCAATAATCACATTCACACCCACCTCCGTCATACATCATTGCTTCAAGCGTGCTgtacatttgtttatatataatctCAAACGCTTCTCTgcttatacacaaacacagtgaaagAGCAGTATTCCGTATACATCTGCATCCCCTTCACCTTGGGATCCAGTGCAGCATGGCATACTGTACTCCTTACTATTCCCGTACACCTCACTATTCCCGTACTCCCCACTAACGCTATACACCTCACTATTCCCGTACACCTCACTATTCCCGTACACCTCACTATTCCCGTACTCCCCACTAACGCTATACACCTCACTATTCCCGTACTCCTCACTATTCCCGTACTCCTCACTATTCCCGTACTCCTCACTATTCCCGTACACCTCACTATTCCCGTACTCCTCACTATTCCCGCACACCTCACTAACCCTGTACACCTCACTATTCCCGTACTCCCCACTAACGCTATACACCTCACTAACCCTATACACCTCAGTATTCCTTATGCATCAGTACCCCCATACACCTTGTTATTCCCATTAATCTTGGTATTCCTGTATGTCTTGGCATCCTGTACGCCTCAGTATCTTGTATGCTTCAATACCCCCAAACACCTCGGTATTCCCACACACCTCGGTATCTCTGTACACCTCAGTATCCACCTGGGAATCACTATACATTTCAATATCCTGTAGCTTCAGTACCCCTGTACTTCTCGGTAGTCCCGTATAAAGAACAACTGGTGTTACTCTCATTTATTCTTTAACTGCCACCAAAACATGTACAAAATAGCAGATGGAAAGCTGCGTTTCCACACTAggtattttttaaacttgttcTTGTATTAAAGGGTGAGCCGTGTAACGCAGGAACTAGCAAAATAATGCTAACGAGCAGGTTTCACACACAGCCTGTCCGGTCTTGCTACGTAAGTGAGTTACATTTAACCAGAGGAATGAAATCCAGCAATCGAGAGAGGTTCCTTTCTGCCGAAAAGGGCACAGGTGTAAAGATATCCGCACCCATCCATCTTAAAAATACTGcaaataacattaacaaaaatattacaaataatattaaaaataacagcttaaattcttttactgcattttattgTGAAACTGATTATTGAAATCTGCTAGGTTCTGACCTGCTACGTGTTTGATATGAGAATGGAGCAGAACGTACTTTTTTCAGAACTTTCATGGCGAATATTTTTCCCGTCTGACTTCCCTGTACTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU461961 True 3845 lncRNA 0.41 2 736859 741306

Neighbor

gene id symbol gene type direction distance location
LOC113545725 NA coding upstream 8942 724127 ~ 727917 (+)
LOC113545735 NA coding upstream 170896 564837 ~ 565963 (+)
LOC113545724 NA coding upstream 218940 512810 ~ 517919 (+)
LOC117596316 LOC108260515,LOC108260518,LOC108260589 coding upstream 237305 461305 ~ 499554 (+)
LOC117596373 LOC108260589,LOC108260518 coding upstream 252952 474115 ~ 483907 (+)
LOC113545734 NA coding downstream 5401 746707 ~ 749895 (+)
si:dkey-22i16.9 NA coding downstream 9829 751135 ~ 755659 (+)
scpp9 NA coding downstream 17466 758772 ~ 762952 (+)
odam LOC108260526 coding downstream 23000 764306 ~ 767760 (+)
scpp5 NA coding downstream 72266 813572 ~ 821979 (+)
G389506 NA non-coding upstream 5694 612303 ~ 731165 (+)
G389505 NA non-coding upstream 78121 604419 ~ 658738 (+)
G389441 NA non-coding upstream 227128 444407 ~ 509731 (+)
G389440 NA non-coding upstream 270050 424585 ~ 466809 (+)
G389501 NA non-coding upstream 290881 428491 ~ 445978 (+)
LOC117596382 NA non-coding downstream 197360 938666 ~ 939174 (+)
G389542 NA non-coding downstream 239117 980423 ~ 998703 (+)
G389707 NA non-coding downstream 475423 1216729 ~ 1232853 (+)
G389959 smox non-coding downstream 946491 1687797 ~ 1692987 (+)
G389967 NA non-coding downstream 971734 1713040 ~ 1713242 (+)
LOC117596315 NA other upstream 386854 348396 ~ 350005 (+)
LOC113524533 NA other upstream 388524 333139 ~ 348335 (+)
smu1b LOC108260605,LOC108431794,LOC107720315,LOC107692159,LOC107746727,LOC107551820 other upstream 408368 290979 ~ 328491 (+)
G389456 LOC108260598 other upstream 555846 99214 ~ 181013 (+)
G389524 NA other downstream 46070 787376 ~ 800566 (+)
G389525 NA other downstream 63054 804360 ~ 805216 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other downstream 877991 1619297 ~ 1632772 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other downstream 973959 1715265 ~ 1750762 (+)
LOC113545784 clhc1 other downstream 1623248 2364554 ~ 2386867 (+)

Expression


Co-expression Network