adra1d (adra1d,LOC107689480,LOC107719776,LOC107711521)


Basic Information

Item Value
gene id adra1d
gene name adra1d,LOC107689480,LOC107719776,LOC107711521
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 1619297 ~ 1632772 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU462495
AGGAGAAATTGGTCAAAATTGTTATGGTTCATTGCTTCCAATATGTCAGGACATAAAATTAGGCAGAGATGCTTGGAGAAACATCTTTGATGCTGTAGGGATCTTGGGTTAGTGTGATCAGCCAATTAGAAGCTTTGGACATACTCTGGTGTAAATTTTATGAAACTACTTGTTGATGCTGATGCAGAGTTAAATTAATTGCGATAAAATCTTTCGGTTTAGGTACAGTATGTTTCAGTCTTTAATAAGATGTTTTGACCTTGTAGGGATTAAAATTGGTTTATTCCGTGTTGCTAAATAAACGCACATATACATCCATCCATGCAGAAAGAAAGGTCATGCATGTGAATGGGCTTTAACCACTAAAACCATGTCTGTTAGCAGCCAAAATTAACGTCTAAGATTTTCAGCTCCCTCCACAGGTTACCAAAAACCACTGCAGtgacatgtttacatttttagcaGAAAATTAAACgttaacacattttataaagttTAGGGTGACTTGTAAAGGAGGTCACAATCAGAACACCACTAAAGAGCTCATTCTTAACATCGGAGCTCAGCTATCCTCTGAAGCAAAAGACCTAAGTACAGGGAGCTACCTATAACTGTGAGACAGCCGAGGAACTGGGAAACCCGTGGTACTGCTTGCTATTTATATACTGACGTGCCAAGACGTACTGTGGCGTTTACATATGTAGAGTGCTTATGGTTTAACCGAAACAGATTGTTATTTAAATGGAATGCAACACACTACTTCTATACACAGATTTGACTATATGTTGATATGATTTGAATTCAAAGTTGTCCTTGAATCCATGCAACGACC
>XM_026945165.2
TCATGTAACAAGTTTTGCTATacaaatgatcatgatgatgcAATCAATATGCAAATTACGCCTTTCGTGACGTCATCTGGCGACTTCTAGCGAGTTTTTCAGCATGCATTTAGCTACTTTCCCTTGAAACCACTTGGCAACACTGTAGCAGTGGTTCTCCAGAGCTCCAGTCCCTCTGGTGGTGTTGCTATGAACTGCATGATTGGTGCAGCGCGTCACTCATTCGGGAGGAGAACCTGTTCACAGGGTTACGCACAGCCAGTGTGGAGCGCGCGCTGAACGCGAGCCACTAACACCAGTGACAAACCTGACGGCGCGTCCGGCGCAGAACAGCACTCTACCTCACATGACTCAGCAGGTGAACGAGGACCTGAGAGAAGATTCCGAGATGTATTTCAGCCCGGTGAATCGCTGAAAGGGACGCTTGAGTGAAAGGAggagaaatggatggatggaaggatggatggatgcgcGTTTCTCTCTCAGCTATGGAAAAGGAAAGTGTGCTGCGCTTTAAAATGAGCCTCGCTGCCAGCGGAACACACGTGTAAACTTTTCTTTATGGAGTTTCAAAATGACCTTGTCTAATCTGAACCAGAGTCATGACGCGCTCAACCTGTCTTTTTCCGAGCTTTCCAACAGCAGCGGAAACGCGACGTGCGCCGGCACCGTGCTGGACGCGCAGGTCGTGGCGGTGGGAATCTTCCTGGCTGTCTTCATCCTGGCTGCGATCGTCGGGAACATTCTGGTCATCCTGTCTGTTCTGTGCAACAGACACTTGCAGACGGTGACCAACTTCTTTATAGTCAATTTAGCCATCGCGGATTTGCTCCTGAGCGTCGTGGTGTTGCCCTTCTCCGCGTCTCTGGAGGTGTTTGGATGTTGGCTGTTTGGACGCGTGTTTTGCAACATCTGGGCTGCTGTGGACGTGTTGTGCTGCACCGCGTCCATTCTCAGCCTGTGCATCATCTccatagatagatacataggaGTCAAATACTGCCTCAAATACCCCACGATCATGACCGAACGCAAAGCCGGGGTCATCCTGGTGCTTGTCTGGGTCTCCTCGGTGGTCATCTCGGTGGGGCCGCTTTTAGGCTGGAAGGAACCTCCGCCGTCGGATGAGAGCATCTGCAGCATCACTGAGGAACCCGGTTACGCGCTGTTCTCCTCGCTGTTCTCCTTCTACCTCCCGCTCATGGTCATCCTTGTCATGTACTTTCGGGTGTACGTCGTGGCCCGGAGGACCACCAAGAGCCTGGAAGCAGGAGTGAAGCGAGAAAGGAACAAATCCATGGAGGTGGTGCTGCGGATCCACTGCCGGAGCTCACCGGAGGACGCCGGCGCGGGGTCGAAAAGCAAGACCCATCCGCTGCGCAGCTCGCTCTCCGTGCGCCTCATGAAGTTCTCCAGGGAGAAAAAAGCAGCCAAAACTCTGGCCATCGTCGTCGGGATGTTCATTGTGTGCTGGCTGCCCTTTTTCTTCGTCTTGCCTCTAGGATCTTTCTTCCCTGCTCTGAAACCTTCAGACATGGTGTTTAAAGTCATCTTCTGGCTGGGTTACTTCAATAGCTGCATCAACCCGGTCATCTACCCCTGCTCTAGTAAAGAATTCCAGCGCGCCTTCACTCGCCTGCTTCGCTGCCAGTGCCATCATCGACGACGCAGCTTACGCCGCTTCTACGACCAGCGCTGGCGTACAGCCCTCAGGGGCCCGGCCAGAGACTCGCGAGGTGTCTATCAGCCCGGTTTCTCCTTCCATGATTCCCGCAGCAGCTCGATTTTCTCATGTCAGAGCAAAGGCCGCTCCCTGAACCTGAAAAGCTGGAGCCTCTTCCCTCCCTTGCAGAAATCTTCCTTCCATCTGAAGGAGAAGATGAACAACTTGTCTAACAAGATCAAGAGCGGTGCAGGGAAGAGTTCAATGCCCTCGTTGGACAGGACTGAGATCGATACGGTGGCCATGGGGATCTACAGCGAGTGCAGCGAGCCAAGCGGGTATCAGATATACGATCTGACGGAATGTTATGGCTTGAAGGAGACAGATATCTAAACAGAGGCGTTCTCGTTTTGCTAACGTCTGGCAAAGAGTTGCTCAGAGACAGACACGAAACGGGCAACTTGACAAAAGCACACTCTTTTAAGAGATAAACTTCAAGATCAAGACgaggaaatgtttttgttttttctaagACAAGGAcagacatttattttcacagggGTAATTTAAGCATTTGATTTTCAGAAGTGAACACAGAAGGTgcaaatatttgttattttccCTGTAAAGTAAAACTACTGCTTTACTCCAGACACAACAAGTGCCATCACTTGGCATACAAACAGACTGTGCCCTCTGTAAATTCACGTGGCCTTTCAATATAATCCTTTAAAGTCACCCAAAACTTTGTGAATTATACAAAACAAAGGTCATCAGGAAATACTGTTGCTATTCTAGCTTTCTTGTTATTACACCAAAAAAACGTTTAGGGGCACCTGTACTGTCACCCTCAtccagaaataaagaaatcaagATTATATCAAGAATCCTGATCAAGAACTCgagatatatataaatatttaaaatactctGTCATGCTGTTAGAGGGAATTAATCAATGAcgaggtgatgtgatgtgaagtggagttactgttcaTCACATCAacctaaaatagtttttttccctgtaacagaacatcatgaagtgttttatttctctgataCAACAGcaaattttccaacaatttCCAACAATCTTTTGTTAACTAAAGAGTgatattttatctgtttattgttacatttaatgttgtgtaacatccatgaaacaagttagttccttttctcagttacgttatagcagctataaacagtcgttccctcaccagcctctctttttttatctctcctgaagttaataagtcaaAAATAACACAGCTTGTCAAGAAAGTTAGAGAGACGtaactcctctttcctgaagagtgtcagaaaaaaacctttgaagttacagctttacctctgactgttacaaagcactgacactggagactccttccataaatgtttccaTAATTGCTTCCAACCAATGGCTGTAAGTCACAGTGGAACTTAGGATGCCTATTTTTTCTCTACTGTGAAATTGtgtctttcttttgtttagTTCCTGCTTGAGATGGAGGAGAAATTGGTCAAAATTGTTATGGTTCATTGCTTCCAATATGTCAGGACATAAAATTAGGCAGAGATGCTTGGAGAAACATCTTTGATGCTGTAGGGATCTTGGGTTAGTGTGATCAGCCAATTAGAAGCTTTGGACATACTCTGGTGTAAATTTTATGAAACTACTTGTTGATGCTGATGCAGAGTTAAATTAATTGCGATAAAATCTTTCGGTTTAGGTACAGTATGTTTCAGTCTTTAATAAGATGTTTTGACCTTGTAGGGATTAAAATTGGTTTATTCCGTGTTGCTAAATAAACGCACATATACATCCATCCATGCAGAAAGAAAGGTCATGCATGTGAATGGGCTTTAACCACTAAAACCATGTCTGTTAGCAGCCAAAATTAACGTCTAAGATTTTCAGCTCCCTCCACAGGTTACCAAAAACCACTGCAGtgacatgtttacatttttagcaGAAAATTAAACgttaacacattttataaagttTAGGGTGACTTGTAAAGGAGGTCACAATCAGAACACCACTAAAGAGCTCATTCTTAACATCGGAGCTCAGCTATCCTCTGAAGCAAAAGACCTAAGTACAGGGAGCTACCTATAACTGTGAGACAGCCGAGGAACTGGGAAACCCGTGGTACTGCTTGCTATTTATATACTGACGTGCCAAGACGTACTGTGGCGTTTACATATGTAGAGTGCTTATGGTTTAACCGAAACAGATTGTTATTTAAATGGAATGCAACACACTACTTCTATACACAGATTTGACTATATGTTGATATGATTTGAATTCAAAGTTGTCCTTGAATCCATGCAACGACCACATAACAagaacttttcattttaattcttgAAACATGCTCTGAATTCATTTGTATTTGCAGATGTGATGTCCATCCATGTCTGATgtaacacaaaaaataaatcgtaaaaaaaaaata

Function

symbol description
adra1d Predicted to enable alpha1-adrenergic receptor activity. Predicted to be involved in several processes, including G protein-coupled receptor signaling pathway; positive regulation of MAPK cascade; and regulation of blood circulation. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human ADRA1D (adrenoceptor alpha 1D).

NR:

description
PREDICTED: alpha-1D adrenergic receptor

GO: NA

KEGG:

id description
K04137 ADRA1D; adrenergic receptor alpha-1D

RNA

RNA id representative length rna type GC content exon number start site end site
TU462495 False 832 lncRNA 0.38 1 1631822 1632653
XM_026945165.2 True 4128 mRNA 0.45 2 1619297 1632772

Neighbor

gene id symbol gene type direction distance location
lrrtm1 lrrtm1,LOC107689474,LOC107706126,LOC107551676,LOC107558618 coding upstream 299221 1315659 ~ 1320076 (+)
suclg1 suclg1 coding upstream 639971 961694 ~ 979326 (+)
LOC113545722 NA coding upstream 668473 941961 ~ 950824 (+)
LOC117596376 LOC108260515,LOC108260518,LOC108260589 coding upstream 682898 931021 ~ 936399 (+)
si:dkey-162b23.4 slc9b2 coding upstream 693332 916769 ~ 925965 (+)
LOC113545749 nrxn1,LOC108443646 coding downstream 240544 1873316 ~ 2185917 (+)
LOC113545799 LOC100305044 coding downstream 687570 2320342 ~ 2335887 (+)
rtn4b rtn4,LOC108412986,LOC105890919 coding downstream 756059 2388831 ~ 2413115 (+)
ppp1r21 ppp1r21 coding downstream 782308 2415080 ~ 2429990 (+)
zgc:64201 LOC108260727,LOC108260508,LOC108429269,LOC105890925 coding downstream 800091 2432863 ~ 2438882 (+)
G389707 NA non-coding upstream 386444 1216729 ~ 1232853 (+)
G389542 NA non-coding upstream 620594 980423 ~ 998703 (+)
LOC117596382 NA non-coding upstream 680123 938666 ~ 939174 (+)
G389515 NA non-coding upstream 877991 736859 ~ 741306 (+)
G389506 NA non-coding upstream 888132 612303 ~ 731165 (+)
G389959 smox non-coding downstream 55025 1687797 ~ 1692987 (+)
G389967 NA non-coding downstream 80268 1713040 ~ 1713242 (+)
G389985 NA non-coding downstream 121945 1754717 ~ 1760912 (+)
G390019 mogs,LOC108260492,LOC108260493,LOC106602766 non-coding downstream 203992 1836764 ~ 1850574 (+)
G390020 LOC108260493 non-coding downstream 209301 1842073 ~ 1854169 (+)
G389438 LOC108260589,LOC108260518,LOC108260515 other upstream 668890 402002 ~ 950407 (+)
G389525 NA other upstream 814081 804360 ~ 805216 (+)
G389524 NA other upstream 818731 787376 ~ 800566 (+)
LOC117596315 NA other upstream 1269292 348396 ~ 350005 (+)
LOC113524533 NA other upstream 1270962 333139 ~ 348335 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other downstream 82493 1715265 ~ 1750762 (+)
LOC113545784 clhc1 other downstream 731782 2364554 ~ 2386867 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other downstream 1726605 3359377 ~ 3400825 (+)
LOC113545745 ptprd other downstream 2831126 4463898 ~ 4856974 (+)
LOC113544283 fbxw7,LOC107745860 other downstream 4198772 5831544 ~ 5910592 (+)

Expression


Co-expression Network