G389967


Basic Information

Item Value
gene id G389967
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 1713040 ~ 1713242 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU462539
TTTTACAGTGTgtactgtacacactcctgggcaaaacaaaaacagtccaAGCTCAAATTGGCAAAATATTAgtcttttaatggtcttaacaccaaatcattggtcaggaaatgagcaggaatgaaacagatagataaaggaagtcagtatgcgagagcttttccctttgatttctgtaaaCGTTTAAGCCTCATGGCTCTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU462539 True 203 lncRNA 0.38 1 1713040 1713242

Neighbor

gene id symbol gene type direction distance location
lrrtm1 lrrtm1,LOC107689474,LOC107706126,LOC107551676,LOC107558618 coding upstream 392964 1315659 ~ 1320076 (+)
suclg1 suclg1 coding upstream 733714 961694 ~ 979326 (+)
LOC113545722 NA coding upstream 762216 941961 ~ 950824 (+)
LOC117596376 LOC108260515,LOC108260518,LOC108260589 coding upstream 776641 931021 ~ 936399 (+)
si:dkey-162b23.4 slc9b2 coding upstream 787075 916769 ~ 925965 (+)
LOC113545749 nrxn1,LOC108443646 coding downstream 160074 1873316 ~ 2185917 (+)
LOC113545799 LOC100305044 coding downstream 607100 2320342 ~ 2335887 (+)
rtn4b rtn4,LOC108412986,LOC105890919 coding downstream 675589 2388831 ~ 2413115 (+)
ppp1r21 ppp1r21 coding downstream 701838 2415080 ~ 2429990 (+)
zgc:64201 LOC108260727,LOC108260508,LOC108429269,LOC105890925 coding downstream 719621 2432863 ~ 2438882 (+)
G389959 smox non-coding upstream 20053 1687797 ~ 1692987 (+)
G389707 NA non-coding upstream 480187 1216729 ~ 1232853 (+)
G389542 NA non-coding upstream 714337 980423 ~ 998703 (+)
LOC117596382 NA non-coding upstream 773866 938666 ~ 939174 (+)
G389515 NA non-coding upstream 971734 736859 ~ 741306 (+)
G389985 NA non-coding downstream 41475 1754717 ~ 1760912 (+)
G390019 mogs,LOC108260492,LOC108260493,LOC106602766 non-coding downstream 123522 1836764 ~ 1850574 (+)
G390020 LOC108260493 non-coding downstream 128831 1842073 ~ 1854169 (+)
G390023 NA non-coding downstream 143248 1856490 ~ 1856901 (+)
G390077 NA non-coding downstream 231307 1944549 ~ 1945455 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other upstream 80268 1619297 ~ 1632772 (+)
G389438 LOC108260589,LOC108260518,LOC108260515 other upstream 762633 402002 ~ 950407 (+)
G389525 NA other upstream 907824 804360 ~ 805216 (+)
G389524 NA other upstream 912474 787376 ~ 800566 (+)
LOC117596315 NA other upstream 1363035 348396 ~ 350005 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other downstream 2023 1715265 ~ 1750762 (+)
LOC113545784 clhc1 other downstream 651312 2364554 ~ 2386867 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other downstream 1646135 3359377 ~ 3400825 (+)
LOC113545745 ptprd other downstream 2750656 4463898 ~ 4856974 (+)
LOC113544283 fbxw7,LOC107745860 other downstream 4118302 5831544 ~ 5910592 (+)

Expression


Co-expression Network