G390077


Basic Information

Item Value
gene id G390077
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 1944549 ~ 1945455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU462678
AGGATGGATGTGATGTAGATCAGCTCGAGGTTGTGGtgagatggaggaggagtgtgATGTAGATCAGCTCGAGGTTGTGGtgagatggaggatggatgtgaTGTAGATCAGCTCGAGGTTGTGGtgagatggaggatggatgtgaTGTAGATGAGTTTGAGGTTGTGGtgagatggaggatggatgtgaAGTAGATGAGCTTGAGGTTGTGGtgagatggaggatggatgtgaTGTAGATGAGTTTGAGGTTGTGGtgagatggaggatggatgtgaTGTAGATGAGTTTGAGGTTGTGgtgagatggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU462678 True 310 lncRNA 0.48 3 1944549 1945455

Neighbor

gene id symbol gene type direction distance location
lrrtm1 lrrtm1,LOC107689474,LOC107706126,LOC107551676,LOC107558618 coding upstream 624473 1315659 ~ 1320076 (+)
suclg1 suclg1 coding upstream 965223 961694 ~ 979326 (+)
LOC113545722 NA coding upstream 993725 941961 ~ 950824 (+)
LOC117596376 LOC108260515,LOC108260518,LOC108260589 coding upstream 1008150 931021 ~ 936399 (+)
si:dkey-162b23.4 slc9b2 coding upstream 1018584 916769 ~ 925965 (+)
LOC113545799 LOC100305044 coding downstream 374887 2320342 ~ 2335887 (+)
rtn4b rtn4,LOC108412986,LOC105890919 coding downstream 443376 2388831 ~ 2413115 (+)
ppp1r21 ppp1r21 coding downstream 469625 2415080 ~ 2429990 (+)
zgc:64201 LOC108260727,LOC108260508,LOC108429269,LOC105890925 coding downstream 487408 2432863 ~ 2438882 (+)
LOC113545751 mpdz coding downstream 1347736 3293191 ~ 3333177 (+)
G390023 NA non-coding upstream 87648 1856490 ~ 1856901 (+)
G390020 LOC108260493 non-coding upstream 90380 1842073 ~ 1854169 (+)
G390019 mogs,LOC108260492,LOC108260493,LOC106602766 non-coding upstream 93975 1836764 ~ 1850574 (+)
G389985 NA non-coding upstream 183637 1754717 ~ 1760912 (+)
G389967 NA non-coding upstream 231307 1713040 ~ 1713242 (+)
G390411 NA non-coding downstream 410878 2356333 ~ 2356794 (+)
G390456 ppp4r3b non-coding downstream 560610 2506065 ~ 2506498 (+)
LOC117596362 NA non-coding downstream 1191173 3136628 ~ 3171123 (+)
G391143 NA non-coding downstream 1455473 3400928 ~ 3401783 (+)
LOC113545714 NA non-coding downstream 2203580 4149035 ~ 4175902 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other upstream 193787 1715265 ~ 1750762 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other upstream 311777 1619297 ~ 1632772 (+)
G389438 LOC108260589,LOC108260518,LOC108260515 other upstream 994142 402002 ~ 950407 (+)
LOC113545784 clhc1 other downstream 419099 2364554 ~ 2386867 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other downstream 1413922 3359377 ~ 3400825 (+)
LOC113545745 ptprd other downstream 2518443 4463898 ~ 4856974 (+)
LOC113544283 fbxw7,LOC107745860 other downstream 3886089 5831544 ~ 5910592 (+)
lrba lrba other downstream 4093959 6039414 ~ 6239078 (+)

Expression


Co-expression Network