Item | Value |
---|---|
gene id | LOC113545745 |
gene name | ptprd |
gene type | misc |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047622.1 |
NCBI id | CM018568.1 |
chromosome length | 15845479 |
location | 4463898 ~ 4856974 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
ptprd | Predicted to enable cell adhesion molecule binding activity; protein tyrosine phosphatase activity; and signaling receptor binding activity. Involved in regulation of presynapse assembly; synaptic membrane adhesion; and trans-synaptic signaling by trans-synaptic complex. Located in extracellular exosome. Is active in glutamatergic synapse. |
id | description |
---|---|
K06777 | PTPRD; receptor-type tyrosine-protein phosphatase delta |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU464251 | False | 689 | lncRNA | 0.44 | 3 | 4463927 | 4479339 |
XM_026945220.2 | False | 9547 | mRNA | 0.48 | 46 | 4484087 | 4856974 |
XM_026945222.2 | False | 9167 | mRNA | 0.48 | 43 | 4604256 | 4856974 |
XM_026945223.2 | False | 9265 | mRNA | 0.48 | 38 | 4701493 | 4856974 |
XM_026945225.2 | False | 9544 | mRNA | 0.48 | 46 | 4484087 | 4856974 |
XM_026945226.2 | False | 9538 | mRNA | 0.48 | 45 | 4484087 | 4856974 |
XM_026945227.2 | False | 9535 | mRNA | 0.48 | 45 | 4484087 | 4856974 |
XM_026945228.2 | False | 9535 | mRNA | 0.48 | 45 | 4484087 | 4856974 |
XM_026945229.2 | False | 9529 | mRNA | 0.48 | 45 | 4484087 | 4856974 |
XM_026945230.2 | False | 9526 | mRNA | 0.48 | 44 | 4484087 | 4856974 |
XM_026945231.2 | False | 9523 | mRNA | 0.48 | 44 | 4484087 | 4856974 |
XM_026945232.2 | False | 9520 | mRNA | 0.48 | 44 | 4484087 | 4856974 |
XM_026945233.2 | False | 9508 | mRNA | 0.48 | 43 | 4484087 | 4856974 |
XM_026945234.2 | False | 9505 | mRNA | 0.48 | 45 | 4484087 | 4856974 |
XM_026945235.2 | False | 9505 | mRNA | 0.48 | 43 | 4484087 | 4856974 |
XM_026945236.2 | False | 9502 | mRNA | 0.48 | 45 | 4484087 | 4856974 |
XM_026945237.2 | False | 9493 | mRNA | 0.48 | 44 | 4484087 | 4856974 |
XM_026945238.2 | False | 9490 | mRNA | 0.48 | 44 | 4484087 | 4856974 |
XM_026945239.2 | False | 9241 | mRNA | 0.48 | 45 | 4484087 | 4856974 |
XM_026945241.2 | False | 9232 | mRNA | 0.48 | 44 | 4484087 | 4856974 |
XM_026945242.2 | False | 9220 | mRNA | 0.48 | 43 | 4484087 | 4856974 |
XM_026945243.2 | False | 9202 | mRNA | 0.48 | 42 | 4484087 | 4856974 |
XM_026945244.2 | False | 8309 | mRNA | 0.47 | 41 | 4484089 | 4856974 |
XM_026945245.2 | False | 8267 | mRNA | 0.47 | 40 | 4484089 | 4856974 |
XM_026945246.2 | False | 8267 | mRNA | 0.47 | 38 | 4484089 | 4856974 |
XM_026945247.2 | False | 8258 | mRNA | 0.47 | 39 | 4484089 | 4856974 |
XM_026945248.2 | False | 8255 | mRNA | 0.47 | 39 | 4484089 | 4856974 |
XM_026945249.2 | False | 9451 | mRNA | 0.48 | 41 | 4484087 | 4856974 |
XM_026945250.2 | False | 9463 | mRNA | 0.48 | 42 | 4484087 | 4856974 |
XM_026945251.2 | False | 9511 | mRNA | 0.48 | 43 | 4484087 | 4856974 |
XM_026945252.2 | False | 9535 | mRNA | 0.48 | 45 | 4484087 | 4856974 |
XM_026945253.2 | False | 8240 | mRNA | 0.47 | 38 | 4484089 | 4856974 |
XM_026945254.2 | False | 9475 | mRNA | 0.48 | 43 | 4484087 | 4856974 |
XM_026945255.2 | False | 8228 | mRNA | 0.47 | 37 | 4484089 | 4856974 |
XM_026945256.2 | False | 9147 | mRNA | 0.48 | 40 | 4484088 | 4856974 |
XM_034301208.1 | True | 9808 | mRNA | 0.48 | 48 | 4463898 | 4856974 |
XM_034301209.1 | False | 8279 | mRNA | 0.47 | 39 | 4484089 | 4856974 |
XM_034301210.1 | False | 9484 | mRNA | 0.48 | 43 | 4484087 | 4856974 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC113545772 | crgm2,LOC108260584,LOC108260664,LOC108260581,LOC108260582,LOC108260580,LOC108260583,LOC108260578,LOC108427436,LOC108427435 | coding | upstream | 47685 | 4414850 ~ 4416213 (+) |
LOC113545771 | crgm2,LOC108260584,LOC108260580,LOC108260664,LOC108260581,LOC108260582,LOC108260583,LOC108260578,LOC108427436,LOC108427435 | coding | upstream | 51193 | 4411762 ~ 4412705 (+) |
LOC113545774 | crgm2,LOC108260584,LOC108260664,LOC108260581,LOC108260580,LOC108260582,LOC108260583,LOC108260578,LOC108427436,LOC108427435 | coding | upstream | 55566 | 4407367 ~ 4408332 (+) |
LOC113545765 | crgm2,LOC108260584,LOC108260664,LOC108260581,LOC108260580,LOC108260582,LOC108260583,LOC108260578,LOC108427436,LOC108427435 | coding | upstream | 58992 | 4403983 ~ 4404906 (+) |
LOC113545764 | crgm2,LOC108260584,LOC108260664,LOC108260581,LOC108260580,LOC108260582,LOC108260583,LOC108260578,LOC108427436,LOC108427435 | coding | upstream | 60156 | 4334610 ~ 4403742 (+) |
LOC113545709 | caap1 | coding | downstream | 217918 | 5074892 ~ 5078909 (+) |
LOC113545783 | elavl2 | coding | downstream | 330585 | 5187559 ~ 5231439 (+) |
LOC113545788 | LOC108260872,LOC108440424,LOC102225496,LOC103145193,LOC103480658,LOC105936236,LOC107086908 | coding | downstream | 510470 | 5367444 ~ 5369498 (+) |
LOC113545754 | LOC108260764 | coding | downstream | 556916 | 5413890 ~ 5419090 (+) |
alpk1 | alpk1 | coding | downstream | 571063 | 5428037 ~ 5436881 (+) |
LOC117596354 | NA | non-coding | upstream | 4558 | 4445456 ~ 4459340 (+) |
G391386 | NA | non-coding | upstream | 250070 | 4213244 ~ 4213828 (+) |
LOC113545714 | NA | non-coding | upstream | 287996 | 4149035 ~ 4175902 (+) |
G391143 | NA | non-coding | upstream | 1062115 | 3400928 ~ 3401783 (+) |
LOC117596362 | NA | non-coding | upstream | 1292775 | 3136628 ~ 3171123 (+) |
LOC117596306 | NA | non-coding | downstream | 7322 | 4864296 ~ 5074406 (+) |
LOC117596386 | NA | non-coding | downstream | 239274 | 5096248 ~ 5156707 (+) |
LOC117596387 | NA | non-coding | downstream | 319116 | 5176090 ~ 5185657 (+) |
G391574 | NA | non-coding | downstream | 515067 | 5372041 ~ 5376797 (+) |
G391612 | NA | non-coding | downstream | 547547 | 5404521 ~ 5404752 (+) |
LOC113545782 | rasgrp2,LOC108261011,LOC108427446 | other | upstream | 1063073 | 3359377 ~ 3400825 (+) |
LOC113545784 | clhc1 | other | upstream | 2077031 | 2364554 ~ 2386867 (+) |
rnf24 | rnf24,LOC107689472,LOC107551705 | other | upstream | 2713136 | 1715265 ~ 1750762 (+) |
adra1d | adra1d,LOC107689480,LOC107719776,LOC107711521 | other | upstream | 2831126 | 1619297 ~ 1632772 (+) |
G389525 | NA | other | upstream | 3658682 | 804360 ~ 805216 (+) |
LOC113544283 | fbxw7,LOC107745860 | other | downstream | 974570 | 5831544 ~ 5910592 (+) |
lrba | lrba | other | downstream | 1182440 | 6039414 ~ 6239078 (+) |
LOC113544406 | LOC108260665,LOC108260638 | other | downstream | 1757885 | 6614859 ~ 6618682 (+) |
LOC117596330 | NA | other | downstream | 2040019 | 6896993 ~ 6900940 (+) |
G393467 | slit1 | other | downstream | 2570644 | 7427618 ~ 7430910 (+) |