G391669


Basic Information

Item Value
gene id G391669
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5680449 ~ 5680688 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU464499
TTGAGCTCCTGCTGTGTGAACTGAGGTGGATTGTCATTGATATCGGTCACGGTTATGTGGACGGTTGCGGTGGAGTTGAGGCGAGGATGACCGTGATCAGTCACCAATACTCTCAGAGTGTGCTGAGGTTGATGCTCCCGATCTAGAGCCGCCCAGTTAATCAGCTCTCCTGCCAAGAGCAAGAAAATAACACAGGACTGGAATGAATATCATCTAATGCCCAACCCGAGAGTCCTAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU464499 True 240 lncRNA 0.50 1 5680449 5680688

Neighbor

gene id symbol gene type direction distance location
si:cabz01076231.1 LOC108260839,LOC108436834,LOC107656773,LOC107574011,LOC107709299 coding upstream 68834 5606322 ~ 5611615 (+)
LOC113544404 LOC108260837,LOC108436836 coding upstream 86880 5589900 ~ 5593569 (+)
epdl1 LOC108260763 coding upstream 237724 5437417 ~ 5442725 (+)
alpk1 alpk1 coding upstream 243568 5428037 ~ 5436881 (+)
LOC113545754 LOC108260764 coding upstream 261359 5413890 ~ 5419090 (+)
tmem154 NA coding downstream 78253 5758941 ~ 5773253 (+)
gatb gatb,LOC106602370 coding downstream 284796 5965484 ~ 5979895 (+)
sh3d19 NA coding downstream 328575 6009263 ~ 6026147 (+)
ncapg ncapg coding downstream 666060 6346748 ~ 6357763 (+)
LOC113544357 slc24a2,LOC108260976,LOC106577456,LOC107377079 coding downstream 734606 6415294 ~ 6462526 (+)
G391668 dchs2 non-coding upstream 1258 5678367 ~ 5679191 (+)
G391667 dchs2 non-coding upstream 2751 5677463 ~ 5677698 (+)
G391666 dchs2 non-coding upstream 4518 5675032 ~ 5675931 (+)
G391665 dchs2 non-coding upstream 7280 5672610 ~ 5673169 (+)
LOC117596392 NA non-coding upstream 30586 5648334 ~ 5649863 (+)
G391670 dchs2 non-coding downstream 1042 5681730 ~ 5682723 (+)
G391671 dchs2 non-coding downstream 2694 5683382 ~ 5683621 (+)
G391672 dchs2 non-coding downstream 3110 5683798 ~ 5684017 (+)
G391674 dchs2 non-coding downstream 5721 5686409 ~ 5687116 (+)
G391673 plrg1,LOC102779185 non-coding downstream 8662 5689350 ~ 5690399 (+)
LOC113545745 ptprd other upstream 823475 4463898 ~ 4856974 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other upstream 2279624 3359377 ~ 3400825 (+)
LOC113545784 clhc1 other upstream 3293582 2364554 ~ 2386867 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other upstream 3929687 1715265 ~ 1750762 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other upstream 4047677 1619297 ~ 1632772 (+)
LOC113544283 fbxw7,LOC107745860 other downstream 150856 5831544 ~ 5910592 (+)
lrba lrba other downstream 358726 6039414 ~ 6239078 (+)
LOC113544406 LOC108260665,LOC108260638 other downstream 934171 6614859 ~ 6618682 (+)
LOC117596330 NA other downstream 1216305 6896993 ~ 6900940 (+)
G393467 slit1 other downstream 1746930 7427618 ~ 7430910 (+)

Expression


Co-expression Network