G392559



Basic Information


Item Value
gene id G392559
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5814204 ~ 5815071 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU465463
GCCAGTTTAGCAACAAAGTAGTCTTattaaaacagttttgtttttctttacatttatacatgtaTCGAATCAAAATTAGGCTATGTATTATTCACATTAATTGTTTCTCAGTGTGCTGCAATAGTATAGCAAAGTAAAGGCCTCAGAATATTCAACATGTGATGATTTCTACAAGGGGTGTGCAAAGACAAAACCATCTTCACAAACTTACAAGCTCACGTAGTCTTGTATTAACATTTGCGTGCAAGTGCTCCACTACTACAGGTGGCGCTAGTAACTGTTTCATGACAATTTCCATGACTACAGGAAGAAAATAGATTCCTCAAAGTCAGCCAATATAGAATAAATTGGCTTGAGCACGCCTAGTTTGTAATGAGGCTCCTTATGCGGAGTTGGCCCAGCTACCAAAGCCTCCTCACACCATCCATTTCTCTGCAATTATGCCATATTGTTCATGGATGCCAGGCAAATGTCATCTCTGCAGGAAGTAATCTGAGGCCTTAAGTTTAGTCTACGTGGTCTAGTGaactttatttttgcatttgcatttttgcaaGTTGGAAAATTGTTAGTGCAGACAGTTCAGGCTCATGAATGTGGAGCTtgttatttacaaaaaagaGATTTAATAAACTAGCTTAAGCAAAGCTCATCAGTGTCGTACAGTGTCATTATTGTGCTTGAAGGTTAATATTTAGGAACAAATGTAGTGACAAGACAGGGACAGTGGGTTCAACCTGATGCAAGAGAGCGTGTCGTCATTCACTTTTTTCTATAGCGATGCACCAATCTGATACTGAGTATCGGTATTGCACAGATGTTCGCCTGAGACGTTGGATTGGAT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU465463 True 844 lncRNA 0.39 2 5814204 5815071

Neighbor


gene id symbol gene type direction distance location
tmem154 NA coding upstream 40951 5758941 ~ 5773253 (+)
si:cabz01076231.1 LOC108260839,LOC108436834,LOC107656773,LOC107574011,LOC107709299 coding upstream 202589 5606322 ~ 5611615 (+)
LOC113544404 LOC108260837,LOC108436836 coding upstream 220635 5589900 ~ 5593569 (+)
epdl1 LOC108260763 coding upstream 371479 5437417 ~ 5442725 (+)
alpk1 alpk1 coding upstream 377323 5428037 ~ 5436881 (+)
gatb gatb,LOC106602370 coding downstream 150413 5965484 ~ 5979895 (+)
sh3d19 NA coding downstream 194192 6009263 ~ 6026147 (+)
ncapg ncapg coding downstream 531677 6346748 ~ 6357763 (+)
LOC113544357 slc24a2,LOC108260976,LOC106577456,LOC107377079 coding downstream 600223 6415294 ~ 6462526 (+)
heatr5b heatr5b coding downstream 696517 6511588 ~ 6542180 (+)
G392541 NA non-coding upstream 47999 5765901 ~ 5766205 (+)
G391673 plrg1,LOC102779185 non-coding upstream 123805 5689350 ~ 5690399 (+)
G391674 dchs2 non-coding upstream 127088 5686409 ~ 5687116 (+)
G391672 dchs2 non-coding upstream 130187 5683798 ~ 5684017 (+)
G391671 dchs2 non-coding upstream 130583 5683382 ~ 5683621 (+)
G392562 NA non-coding downstream 41223 5856294 ~ 5859687 (+)
G392565 NA non-coding downstream 67812 5882883 ~ 5901167 (+)
G392578 NA non-coding downstream 151658 5966729 ~ 5969232 (+)
G392575 rps3a,LOC107695588 non-coding downstream 193951 6009022 ~ 6028337 (+)
G392610 mab21l2 non-coding downstream 354893 6169964 ~ 6213340 (+)
LOC113545745 ptprd other upstream 957230 4463898 ~ 4856974 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other upstream 2413379 3359377 ~ 3400825 (+)
LOC113545784 clhc1 other upstream 3427337 2364554 ~ 2386867 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other upstream 4063442 1715265 ~ 1750762 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other upstream 4181432 1619297 ~ 1632772 (+)
LOC113544283 fbxw7,LOC107745860 other downstream 16473 5831544 ~ 5910592 (+)
lrba lrba other downstream 224343 6039414 ~ 6239078 (+)
LOC113544406 LOC108260665,LOC108260638 other downstream 799788 6614859 ~ 6618682 (+)
LOC117596330 NA other downstream 1081922 6896993 ~ 6900940 (+)
G393467 slit1 other downstream 1612547 7427618 ~ 7430910 (+)

Expression



Co-expression Network